Gene
| Gene Model ID | pfu_aug2.0_2903.1_12309 |
|---|---|
| Locus | scaffold2903.1 : 1110 ... 23805 : + |
| To GenomeBrowser | scaffold2903.1:1110..23805 |
| Genes list of scaffold | scaffold2903.1 |
| Synonym | pfu_aug1.0_414.1_22180 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2903.1_12309.t1 | 1 | 1 | XPA_N | 96 | 124 | 1.6e-11 | 43.6 | 1.1e-14 | 3.1e-11 | 42.7 |
| pfu_aug2.0_2903.1_12309.t1 | 1 | 1 | XPA_C | 142 | 190 | 1.2e-19 | 69.5 | 1.0e-22 | 3.0e-19 | 68.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2903.1_12309.t1 | gi|348525054|ref|XP_003450037.1| | PREDICTED: DNA repair protein complementing XP-A cells homolog [Oreochromis niloticus] | 0.0 |
| pfu_aug2.0_2903.1_12309.t1 | gi|554841842|ref|XP_005931331.1| | PREDICTED: DNA repair protein complementing XP-A cells homolog isoform X2 [Haplochromis burtoni] | 0.0 |
| pfu_aug2.0_2903.1_12309.t1 | gi|554841840|ref|XP_005931330.1| | PREDICTED: DNA repair protein complementing XP-A cells homolog isoform X1 [Haplochromis burtoni] | 0.0 |
| pfu_aug2.0_2903.1_12309.t1 | gi|583991402|ref|XP_006790883.1| | PREDICTED: DNA repair protein complementing XP-A cells homolog [Neolamprologus brichardi] | 0.0 |
| pfu_aug2.0_2903.1_12309.t1 | gi|548429406|ref|XP_005743664.1| | PREDICTED: DNA repair protein complementing XP-A cells homolog [Pundamilia nyererei] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2903.1_12309.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2903.1_12309.t1 atggcatcaaatgaagtagatgcagaagacaggaaacttacggctgctcagcgcgcagcaatagaacgtaatagacagaa agccctgcttgtacgggaagccaaacaaaaacgcaagctgtttgaagctgaaaaaatagagacaagagtgaagttgacaa aaacagtagacacaggagcaggatttttcttggaagaagaagatgacaaagagacgaaaggtcaactgaaagtagtacac ccacttggtccgttggagccggtaacatcatcaggagacgttgtagatgatacaatatgtgataactgtgggaaagaatt catggattcctacctcttctcacattttgatgctctcatctgtgataattgcaaccgatttccatattttttatctttgt accaaagagaagaagacaaccctctcataacaaggacagatgccaagaataaatatttattaaaagatgctgattttgat aagcgggatccaaaactgaaattcattgttcgtaggaatccccacaatcctcgatggggagatatgaaactttactatga acctcagatatatgacagagctatggaggtatggggaagtgaagagggactggaggaggccaaggacaagcgcaccgaaa atcgggaaaaatccaaacagaaaaagtttgacaaaaaagttaaaggcgttaagtacttatggtcccctagaagtgttgtt gtttttcatctgcatctggctataggtggcactgccaataggtggcactgccacaggcaaaaaattgaaaagatgtcttc tcagagatggggacaaacacggccgagaacagaggatatacagggacagctgatggtcaaaactggggtgttagaggccg agaaaagagccaagaaggaactggaagacaaataccgtattctttccaataagctagaacgagttcaaatagtgatgaac cagaaaaacgaggagctggaggaggagaggagggcaagagaggcggcggagaagacgtgtgaaaccttaaaaatgacgat agataaactagaggagtacttaaggaagaaacacacctcagctgagactagcctcctggcacctacagacataagcggcg agaagcctattgtgtcagatttatcaagactacaaaacgagctacagaaaaagaaggaagaagtagagagagaaagacat ttcagaatcaaagtggagaaaaggagttcgatgccaacaacattcaatgacacccgcctcttcccatctctctctagtca gagtatatataaggaaagtagaggcggatgttcttgtggatcgttggcatcgagctcctgtggaatttga |
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Protein
| Protein ID | pfu_aug2.0_2903.1_12309.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2903.1_12309.t1 MASNEVDAEDRKLTAAQRAAIERNRQKALLVREAKQKRKLFEAEKIETRVKLTKTVDTGAGFFLEEEDDKETKGQLKVVH PLGPLEPVTSSGDVVDDTICDNCGKEFMDSYLFSHFDALICDNCNRFPYFLSLYQREEDNPLITRTDAKNKYLLKDADFD KRDPKLKFIVRRNPHNPRWGDMKLYYEPQIYDRAMEVWGSEEGLEEAKDKRTENREKSKQKKFDKKVKGVKYLWSPRSVV VFHLHLAIGGTANRWHCHRQKIEKMSSQRWGQTRPRTEDIQGQLMVKTGVLEAEKRAKKELEDKYRILSNKLERVQIVMN QKNEELEEERRAREAAEKTCETLKMTIDKLEEYLRKKHTSAETSLLAPTDISGEKPIVSDLSRLQNELQKKKEEVERERH FRIKVEKRSSMPTTFNDTRLFPSLSSQSIYKESRGGCSCGSLASSSCGI |
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