Gene
| Gene Model ID | pfu_aug2.0_2903.1_12310 |
|---|---|
| Locus | scaffold2903.1 : 25129 ... 44565 : - |
| To GenomeBrowser | scaffold2903.1:25129..44565 |
| Genes list of scaffold | scaffold2903.1 |
| Synonym | pfu_aug1.0_414.1_22179 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| methylcrotonoyl- carboxylase subunit mitochondrial | GO:0004075 GO:0005524 GO:0008152 GO:0046872 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2903.1_12310.t1 | 2 | 1 | CPSase_L_chain | 25 | 134 | 1.4013e-45 | 154.0 | 0.0 | 4.34403e-44 | 149.1 |
| pfu_aug2.0_2903.1_12310.t1 | 2 | 1 | ATPgrasp_Ter | 38 | 203 | 4.4e-16 | 58.5 | 5.4e-13 | 6.6e-10 | 38.2 |
| pfu_aug2.0_2903.1_12310.t1 | 1 | 1 | CPSase_L_D2 | 140 | 346 | 0.0 | 251.0 | 0.0 | 0.0 | 250.1 |
| pfu_aug2.0_2903.1_12310.t1 | 1 | 1 | ATP-grasp_4 | 140 | 317 | 1.3e-14 | 54.3 | 2.0e-17 | 2.5e-14 | 53.4 |
| pfu_aug2.0_2903.1_12310.t1 | 1 | 1 | Dala_Dala_lig_C | 161 | 315 | 4.9e-13 | 48.9 | 1.1e-15 | 1.4e-12 | 47.4 |
| pfu_aug2.0_2903.1_12310.t1 | 1 | 1 | ATP-grasp | 164 | 316 | 2.0e-10 | 40.2 | 3.5e-13 | 4.3e-10 | 39.2 |
| pfu_aug2.0_2903.1_12310.t1 | 1 | 1 | RimK | 166 | 322 | 1.9e-06 | 27.5 | 8.0e-09 | 9.8e-06 | 25.1 |
| pfu_aug2.0_2903.1_12310.t1 | 1 | 1 | ATP-grasp_3 | 170 | 318 | 8.4e-07 | 28.9 | 1.2e-09 | 1.5e-06 | 28.2 |
| pfu_aug2.0_2903.1_12310.t1 | 2 | 2 | ATPgrasp_Ter | 277 | 346 | 4.4e-16 | 58.5 | 6.3e-07 | 0.00077 | 18.2 |
| pfu_aug2.0_2903.1_12310.t1 | 2 | 2 | CPSase_L_chain | 280 | 321 | 1.4013e-45 | 154.0 | 0.12 | 150.0 | 2.5 |
| pfu_aug2.0_2903.1_12310.t1 | 1 | 1 | Biotin_carb_C | 360 | 466 | 4.9e-36 | 122.9 | 7.7e-39 | 9.5e-36 | 122.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2903.1_12310.t1 | gi|676448400|ref|XP_009051720.1| | hypothetical protein LOTGIDRAFT_103911 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_2903.1_12310.t1 | gi|524892029|ref|XP_005102546.1| | PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_2903.1_12310.t1 | gi|556956366|ref|XP_005989468.1| | PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_2903.1_12310.t1 | gi|116487525|gb|AAI25959.1| | Zgc:154106 [Danio rerio] | 0.0 |
| pfu_aug2.0_2903.1_12310.t1 | gi|55742190|ref|NP_001006691.1| | methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Xenopus (Silurana) tropicalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2903.1_12310.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2903.1_12310.t1 atggatgagaaaaattctggcatatcacgtaaaataggaagaataactaaggctgagttcagttgtgtgaagaagataga gaaggtactgatagctaatcgtggagagatcgcctgtagagtgatacgtacagcaagacgattaggaatacgtactgtgg ctgtgtatagcgatgccgatagggactctcttcatgtttccatggctgatgaggcctatcacatcggtccacctgccgcc tcacacagctaccttagacatgacaagattctagacgtggctaagtcagcaggagcacacgccatccatccaggttacgg cttcttgtcggagaacacagagtttgccgagctctgtagtaaagagggcgtgattttcattggtcctcctgcatcagcta tcagagacatgggcattaagagcacttccaaggcaatcatgtccgctgcaggagtgccaatcattgagggttaccatggt gaggaccaatcactggacagattgaaacaagaagcagctaagattggctatccagtgatgatcaaagctgttagaggtgg aggtggaaagggtatgagaatcgctatgtcagaggatgagtttgagagtcagttagagtcagctaaaaccgagggcttga aatcatttggtgatgacatcatgttattggaaaaatttgtacaaacacccaggcacgtagaggtacaagtgtttggtgac cagcacggtaattatgtatatctgtttgagagggactgcagtgtacagagacgacatcaaaaaatcatagaggaggctcc agcaccgggtttgtctgatgaggtccgtagatcgataggagaggctgcagttaaagctgctaaggctgtaaattatgtag gggcagggacagtagaatttatcatggataaagatcagaagttttactttatggagatgaacacacgacttcaagtggaa catcctgtaacagagatgattacagacacagatctcgtggaatggcagctcagggtagccagtggtgagagactacctct aacacaagaagatgtctgttttaccggccatgcatttgaggctagaatttatgctgaggaccctaacagtgcttttatgc cgggggcggggccgttagactatctgtcgactcccactcctgacacttacaccaggatagataccggagttagacagggt gatgaggtgtccgtacactatgatccaatgatagccaagttgattgtatggtcagatgacaggacgtctgctctcaggaa aatcagaagtgctctatcagagtaccatgtactaggacttaatactaacatccagttcctgatggatctagcacgtcatc cacaatttgaggccgctgaagtacatacagacttcattccgcagcattacgatcagttattcccggagcgtaccttgtct acagaggccatttgtcaggcagctgtaattctggtgataaaagaacaggaaaacgccttcaccaggaattataatactca agatcctttctctccattttccctgtgttatggagctaggataaatgcagcacccgtaagaaaagtacaacttcaagatg gtgaccagaatcctttctctccattttccctgtgttatggagctaggataaatgcagcacccataagaaaagtacaactt caagatggtgaccagatatttgctgtactgaaattgaggctgagttccagatggcagacaagagatttacatgcaccagt gatatcatttggttgttacaagaatttttctcggatcagatttggtgcaaaacgtataatataa |
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Protein
| Protein ID | pfu_aug2.0_2903.1_12310.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2903.1_12310.t1 MDEKNSGISRKIGRITKAEFSCVKKIEKVLIANRGEIACRVIRTARRLGIRTVAVYSDADRDSLHVSMADEAYHIGPPAA SHSYLRHDKILDVAKSAGAHAIHPGYGFLSENTEFAELCSKEGVIFIGPPASAIRDMGIKSTSKAIMSAAGVPIIEGYHG EDQSLDRLKQEAAKIGYPVMIKAVRGGGGKGMRIAMSEDEFESQLESAKTEGLKSFGDDIMLLEKFVQTPRHVEVQVFGD QHGNYVYLFERDCSVQRRHQKIIEEAPAPGLSDEVRRSIGEAAVKAAKAVNYVGAGTVEFIMDKDQKFYFMEMNTRLQVE HPVTEMITDTDLVEWQLRVASGERLPLTQEDVCFTGHAFEARIYAEDPNSAFMPGAGPLDYLSTPTPDTYTRIDTGVRQG DEVSVHYDPMIAKLIVWSDDRTSALRKIRSALSEYHVLGLNTNIQFLMDLARHPQFEAAEVHTDFIPQHYDQLFPERTLS TEAICQAAVILVIKEQENAFTRNYNTQDPFSPFSLCYGARINAAPVRKVQLQDGDQNPFSPFSLCYGARINAAPIRKVQL QDGDQIFAVLKLRLSSRWQTRDLHAPVISFGCYKNFSRIRFGAKRII |
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