Gene
| Gene Model ID | pfu_aug2.0_2905.1_18963 |
|---|---|
| Locus | scaffold2905.1 : 1 ... 1938 : + |
| To GenomeBrowser | scaffold2905.1:1..1938 |
| Genes list of scaffold | scaffold2905.1 |
| Synonym | pfu_aug1.0_2418.1_58904 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2905.1_18963.t1 | 3 | 1 | Ldl_recept_b | 2 | 40 | 3.9e-18 | 65.4 | 1.7e-11 | 5.1e-08 | 33.1 |
| pfu_aug2.0_2905.1_18963.t1 | 3 | 2 | Ldl_recept_b | 45 | 76 | 3.9e-18 | 65.4 | 2.4e-06 | 0.0071 | 16.6 |
| pfu_aug2.0_2905.1_18963.t1 | 3 | 3 | Ldl_recept_b | 85 | 125 | 3.9e-18 | 65.4 | 1.6e-05 | 0.049 | 13.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2905.1_18963.t1 | gi|551517320|ref|XP_005810161.1| | PREDICTED: LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 5-like [Xiphophorus maculatus] | 1.0e-24 |
| pfu_aug2.0_2905.1_18963.t1 | gi|597758745|ref|XP_007241071.1| | PREDICTED: low-density lipoprotein receptor-related protein 6-like [Astyanax mexicanus] | 3.0e-24 |
Transcript
| Transcript ID | pfu_aug2.0_2905.1_18963.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2905.1_18963.t1 gatcgtatattggacagattggggttctaatccaaaaatagaaaaggctaattatgacggaacaggtaggtcggtcatag ccgactcaaatctgaaattccccaacggcctagtgtatgatccatcaaccaactctctgtttttctgtgatgctggtact aacatgattgaacaaataaacactgacggcagcggacgtaagatgttgtttacagatatcggcgctcacttttttggcgt tgacgttgattcacaatatgtgtacttttcagactggaataaggacggtattatgaggattgctaaagacggttccggag aagctccaatcggacccccaacgtttggaagactgaacggcgttgccttacatcataatggagggcaatcgagatag |
|
Protein
| Protein ID | pfu_aug2.0_2905.1_18963.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2905.1_18963.t1 IVYWTDWGSNPKIEKANYDGTGRSVIADSNLKFPNGLVYDPSTNSLFFCDAGTNMIEQINTDGSGRKMLFTDIGAHFFGV DVDSQYVYFSDWNKDGIMRIAKDGSGEAPIGPPTFGRLNGVALHHNGGQSR |
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