Gene
| Gene Model ID | pfu_aug2.0_2908.1_28982 |
|---|---|
| Locus | scaffold2908.1 : 40916 ... 59784 : + |
| To GenomeBrowser | scaffold2908.1:40916..59784 |
| Genes list of scaffold | scaffold2908.1 |
| Synonym | pfu_aug1.0_2864.1_44512 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2908.1_28982.t1 | 4 | 1 | zf-UBP | 29 | 92 | 1.6e-19 | 69.7 | 3.2e-23 | 1.6e-19 | 69.7 |
| pfu_aug2.0_2908.1_28982.t1 | 3 | 1 | UCH | 60 | 89 | 0.0 | 220.8 | 0.85 | 4200.0 | -3.5 |
| pfu_aug2.0_2908.1_28982.t1 | 3 | 2 | UCH | 98 | 116 | 0.0 | 220.8 | 1.2 | 5800.0 | -4.0 |
| pfu_aug2.0_2908.1_28982.t1 | 1 | 1 | UCH_1 | 149 | 473 | 9.9e-32 | 110.5 | 4.7e-35 | 2.3e-31 | 109.3 |
| pfu_aug2.0_2908.1_28982.t1 | 3 | 3 | UCH | 150 | 491 | 0.0 | 220.8 | 0.0 | 0.0 | 220.8 |
| pfu_aug2.0_2908.1_28982.t1 | 4 | 2 | zf-UBP | 170 | 175 | 1.6e-19 | 69.7 | 3.0 | 15000.0 | -4.0 |
| pfu_aug2.0_2908.1_28982.t1 | 4 | 3 | zf-UBP | 302 | 306 | 1.6e-19 | 69.7 | 3.0 | 15000.0 | -4.2 |
| pfu_aug2.0_2908.1_28982.t1 | 4 | 4 | zf-UBP | 358 | 368 | 1.6e-19 | 69.7 | 0.1 | 500.0 | 0.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2908.1_28982.t1 | gi|524888348|ref|XP_005100745.1| | PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_2908.1_28982.t1 | gi|676479561|ref|XP_009061783.1| | hypothetical protein LOTGIDRAFT_127660 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_2908.1_28982.t1 | gi|507635348|ref|XP_004628889.1| | PREDICTED: ubiquitin carboxyl-terminal hydrolase 3 isoform X1 [Octodon degus] | 0.0 |
| pfu_aug2.0_2908.1_28982.t1 | gi|594040860|ref|XP_006044985.1| | PREDICTED: ubiquitin carboxyl-terminal hydrolase 3 isoform X1 [Bubalus bubalis] | 0.0 |
| pfu_aug2.0_2908.1_28982.t1 | gi|556950836|ref|XP_005987778.1| | PREDICTED: ubiquitin carboxyl-terminal hydrolase 3 isoform X1 [Latimeria chalumnae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2908.1_28982.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2908.1_28982.t1 atggaatgcccgcatttatcagacaatgttcaaattactgcaccgccgatcaaaggagaaaacatcccagaaaaatttta tatttgcagtgtatgcaagactgagaagagtccatggatatgtgtgaagtgtggaaaaatacattgtggaaggtatgtaa atggacatgccaagcttcattatgagagcaccacctctggtcattctatatgtatggactgtgagagctatgcagttttc tgctatacatgtgatgattttataaccaatgacacggcatttggtcacttggataaactacggaaagaactccagtcaat acaaagcgaacaagaccagaaaagagacaagaaattaagacggaaatgttccgtggactctcaggaaaatgacagatcaa agaagaaaattaaaaaggatgacaagttacgaatgcctcgatcatcaggactaagaaatctggggaatacatgtttcatg aatgcagtattacaatccttaagtaacatccatcaattttgtggttacataaaacaactgccatctttagaagagaaaac gaccaaaacaaaacgtcatcaaaacaggaagtctagatcggaggaggaagatatattattggttgaagaactaaggaaga cattgtgtgctttatggcagggaacaaaaggagccatatcacctgaatctctattcaccgtcatctggaaagttgtgcca agatttaggggctaccagcaacaggatgcccacgagtttatgagatatttgttagaccggttacatgtagaactcttgac attattaccctacccaaacatagacagcccgtttattggaccaaagggtaaaagtaccatagtgactgccatattcggtg gtttactacagaacgaggttaactgtcttatatgtgggatggagtctaaaaaacatgatccttttctagatttgtcatta gatatacctccacaattttctacccgaggaagtaagccaaaagacggggagtcacaagtttgtagattagctgattgtct ttcaagtttcacagacgtagaagaattagaagatacagaattatacatgtgtagtaactgtaaactacgtcaacgttcaa caaaaaagttctggatcagacgattaccaaatgtattatgtttgcatatcaaacgttttcgatggcagtctttcttccga gtaaagctggaaacttttgtagaatttcctctcactggtcttagtatgaataaatatgtattgaacaatctgcatgagac gcggggaagcggtggcggtagtaacgagtatgatttggccgctgttatagtccatcacggctcaggagctggttcaggtc actacacgtcatatgctcgcaatgaaggtcagtggttccatttcaatgacagtacagtaacaccctgtgatagcacgacc gttgccaagtgtaaagcgtacattctgttctacatacggagagaattcaaacttcctgagtatctcacatacaagaatgg aaagtga |
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Protein
| Protein ID | pfu_aug2.0_2908.1_28982.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2908.1_28982.t1 MECPHLSDNVQITAPPIKGENIPEKFYICSVCKTEKSPWICVKCGKIHCGRYVNGHAKLHYESTTSGHSICMDCESYAVF CYTCDDFITNDTAFGHLDKLRKELQSIQSEQDQKRDKKLRRKCSVDSQENDRSKKKIKKDDKLRMPRSSGLRNLGNTCFM NAVLQSLSNIHQFCGYIKQLPSLEEKTTKTKRHQNRKSRSEEEDILLVEELRKTLCALWQGTKGAISPESLFTVIWKVVP RFRGYQQQDAHEFMRYLLDRLHVELLTLLPYPNIDSPFIGPKGKSTIVTAIFGGLLQNEVNCLICGMESKKHDPFLDLSL DIPPQFSTRGSKPKDGESQVCRLADCLSSFTDVEELEDTELYMCSNCKLRQRSTKKFWIRRLPNVLCLHIKRFRWQSFFR VKLETFVEFPLTGLSMNKYVLNNLHETRGSGGGSNEYDLAAVIVHHGSGAGSGHYTSYARNEGQWFHFNDSTVTPCDSTT VAKCKAYILFYIRREFKLPEYLTYKNGK |
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