Gene
| Gene Model ID | pfu_aug2.0_2909.1_32338 |
|---|---|
| Locus | scaffold2909.1 : 31696 ... 78837 : - |
| To GenomeBrowser | scaffold2909.1:31696..78837 |
| Genes list of scaffold | scaffold2909.1 |
| Synonym | pfu_aug1.0_1135.1_51209 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2909.1_32338.t1 | 3 | 1 | Ig_3 | 1 | 78 | 1.4e-22 | 79.9 | 1.1e-08 | 2.0e-05 | 25.0 |
| pfu_aug2.0_2909.1_32338.t1 | 3 | 1 | I-set | 2 | 91 | 2.1e-32 | 110.8 | 3.0e-13 | 5.6e-10 | 38.9 |
| pfu_aug2.0_2909.1_32338.t1 | 3 | 1 | Ig_2 | 2 | 80 | 5.3e-23 | 80.9 | 1.0e-06 | 0.0019 | 18.3 |
| pfu_aug2.0_2909.1_32338.t1 | 3 | 1 | V-set | 12 | 56 | 1.1e-08 | 34.9 | 0.015 | 28.0 | 4.6 |
| pfu_aug2.0_2909.1_32338.t1 | 3 | 1 | C2-set_2 | 16 | 80 | 7.5e-09 | 35.3 | 4.2e-06 | 0.0077 | 16.1 |
| pfu_aug2.0_2909.1_32338.t1 | 3 | 1 | ig | 17 | 69 | 2.9e-13 | 49.7 | 3.9e-07 | 0.00071 | 19.6 |
| pfu_aug2.0_2909.1_32338.t1 | 3 | 2 | Ig_3 | 105 | 179 | 1.4e-22 | 79.9 | 1.6e-08 | 2.9e-05 | 24.4 |
| pfu_aug2.0_2909.1_32338.t1 | 3 | 2 | I-set | 106 | 183 | 2.1e-32 | 110.8 | 5.1e-14 | 9.4e-11 | 41.4 |
| pfu_aug2.0_2909.1_32338.t1 | 3 | 2 | Ig_2 | 111 | 180 | 5.3e-23 | 80.9 | 3.4e-11 | 6.3e-08 | 32.6 |
| pfu_aug2.0_2909.1_32338.t1 | 3 | 2 | V-set | 111 | 180 | 1.1e-08 | 34.9 | 3.9e-07 | 0.00072 | 19.4 |
| pfu_aug2.0_2909.1_32338.t1 | 3 | 2 | C2-set_2 | 116 | 147 | 7.5e-09 | 35.3 | 0.026 | 48.0 | 3.9 |
| pfu_aug2.0_2909.1_32338.t1 | 3 | 2 | ig | 121 | 176 | 2.9e-13 | 49.7 | 4.3e-05 | 0.079 | 13.0 |
| pfu_aug2.0_2909.1_32338.t1 | 3 | 3 | Ig_3 | 239 | 305 | 1.4e-22 | 79.9 | 3.2e-09 | 5.9e-06 | 26.6 |
| pfu_aug2.0_2909.1_32338.t1 | 3 | 3 | I-set | 243 | 308 | 2.1e-32 | 110.8 | 2.1e-09 | 4.0e-06 | 26.6 |
| pfu_aug2.0_2909.1_32338.t1 | 3 | 3 | Ig_2 | 245 | 314 | 5.3e-23 | 80.9 | 3.6e-09 | 6.8e-06 | 26.1 |
| pfu_aug2.0_2909.1_32338.t1 | 3 | 3 | V-set | 246 | 274 | 1.1e-08 | 34.9 | 0.011 | 21.0 | 5.0 |
| pfu_aug2.0_2909.1_32338.t1 | 3 | 3 | ig | 252 | 302 | 2.9e-13 | 49.7 | 0.00016 | 0.3 | 11.2 |
| pfu_aug2.0_2909.1_32338.t1 | 3 | 3 | C2-set_2 | 255 | 283 | 7.5e-09 | 35.3 | 0.00023 | 0.42 | 10.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2909.1_32338.t1 | gi|637262091|ref|XP_008101576.1| | PREDICTED: receptor-type tyrosine-protein phosphatase delta isoform X17 [Anolis carolinensis] | 1.4013e-45 |
| pfu_aug2.0_2909.1_32338.t1 | gi|637262095|ref|XP_008101577.1| | PREDICTED: receptor-type tyrosine-protein phosphatase delta isoform X18 [Anolis carolinensis] | 5.60519e-45 |
| pfu_aug2.0_2909.1_32338.t1 | gi|637262037|ref|XP_008101563.1| | PREDICTED: receptor-type tyrosine-protein phosphatase delta isoform X4 [Anolis carolinensis] | 5.60519e-45 |
| pfu_aug2.0_2909.1_32338.t1 | gi|560900831|ref|XP_006176821.1| | PREDICTED: receptor-type tyrosine-protein phosphatase delta isoform X4 [Camelus ferus] | 4.06377e-44 |
Transcript
| Transcript ID | pfu_aug2.0_2909.1_32338.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2909.1_32338.t1 ttccaccagttatcacgctacctttaaggaaccagatcgtcctcaaagatagtaaagtaagtttggtttgtaaagcagca gggacagggccaataagattcacatggctgaaagaaggcaaaacgctcagtgagaataggatgcgcttcactgttcgttc cattccaaacggaagtgtgctcagaattgatcctgtaaaatccaaggaccaggaatttgcttgtatagcaaataatgttg cgggtcaatcagttccttctgaggcacatctaagtgttcttaccagcctgcccagagatttcataaatggatacccgaga atcgtggtgcatcctccactaagagtcgctgagaagggtagagatgtaacattagcctgtaaagcagagggagataacgt aacaatagagtggtataaagattacgtgccattagatgtcaacaacgatgagcgcttaaacatcctacctggaggaaccc tccacattcaaagaagtgagacatcagatgaaggcttatatgagtgtttggcagagaatgatattggtgtagcttactcg tatggtgctatgttgtatgtcaaaggcccaactctaagccccgcccttgaccgattcggaccagctgtcaatcattatct atctcacggacttgtgaccggtcagctgtgtgatcaatcaagcgtagataaggttcgccgagtgcctccgtatttttcta gctaccgagaatcggatcgtatagtagtaagtccaggggatgcaataaatttgacatgcacggccaaaggttctccgtta ccagatgttaaatggatggacggtgtcaaggaactgggatcaagtgtcactggtatcaatgtactaagacttgaagatgt aagagagagcaaaaacttcacatgtgtagcatcttccagccttggatatatatccagagtagtaggtgttatagtaaatg gttatagcaggccgtctaaagcctgtgcagctgcattggattcttgccaattcattgacccagaatcagtttcaccatat gtccacaatcaggtcttcttaaacttcactcctgagaagaatgacagattatgcacacttatcgaacaaggtgttaattg ttttaagtctgcggtaaatgaacctgactgtaaggagttttttggtccaaccttagatattggcttgatggagacatttc atggtagtatttgtagcggacaagggagaaaagatttggatgagtttgcgagatgcgctaacaaccaattccttcagaga gagtactatggacgggtatttgacattggaggacaaatagaaggatgggagatgtgcacaaatcgaagtattcctcagag cggaactgaatccatatgcagatctattcaatcgatgttcatatcacttccattttatacaacacggtattgcgatcagg atgcaacagaagctgtgaaacgaatcatgcaatatattcatgatgtgcagtcccaattatttgttgttacgaagcccccc tttggaccatgtcggatcataccagatgactttgctatcaccttgtaa |
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Protein
| Protein ID | pfu_aug2.0_2909.1_32338.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2909.1_32338.t1 PPVITLPLRNQIVLKDSKVSLVCKAAGTGPIRFTWLKEGKTLSENRMRFTVRSIPNGSVLRIDPVKSKDQEFACIANNVA GQSVPSEAHLSVLTSLPRDFINGYPRIVVHPPLRVAEKGRDVTLACKAEGDNVTIEWYKDYVPLDVNNDERLNILPGGTL HIQRSETSDEGLYECLAENDIGVAYSYGAMLYVKGPTLSPALDRFGPAVNHYLSHGLVTGQLCDQSSVDKVRRVPPYFSS YRESDRIVVSPGDAINLTCTAKGSPLPDVKWMDGVKELGSSVTGINVLRLEDVRESKNFTCVASSSLGYISRVVGVIVNG YSRPSKACAAALDSCQFIDPESVSPYVHNQVFLNFTPEKNDRLCTLIEQGVNCFKSAVNEPDCKEFFGPTLDIGLMETFH GSICSGQGRKDLDEFARCANNQFLQREYYGRVFDIGGQIEGWEMCTNRSIPQSGTESICRSIQSMFISLPFYTTRYCDQD ATEAVKRIMQYIHDVQSQLFVVTKPPFGPCRIIPDDFAITL |
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