Gene
| Gene Model ID | pfu_aug2.0_291.1_03957 |
|---|---|
| Locus | scaffold291.1 : 259099 ... 264373 : + |
| To GenomeBrowser | scaffold291.1:259099..264373 |
| Genes list of scaffold | scaffold291.1 |
| Synonym | pfu_aug1.0_1687.1_37083 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| caveolin-1 isoform x2 | GO:0001756 GO:0007507 GO:0008013 GO:0009953 GO:0016020 GO:0030299 GO:0044464 GO:0048884 GO:0050688 GO:0060036 GO:0060338 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_291.1_03957.t1 | 1 | 1 | Caveolin | 26 | 155 | 8.54792e-44 | 148.7 | 0.0 | 9.94922e-44 | 148.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_291.1_03957.t1 | gi|632946658|ref|XP_007888665.1| | PREDICTED: caveolin-3 [Callorhinchus milii] | 2.0e-34 |
| pfu_aug2.0_291.1_03957.t1 | gi|556979897|ref|XP_005996740.1| | PREDICTED: caveolin-1 isoform X2 [Latimeria chalumnae] | 3.0e-34 |
| pfu_aug2.0_291.1_03957.t1 | gi|556979894|ref|XP_005996739.1| | PREDICTED: caveolin-1 isoform X1 [Latimeria chalumnae] | 5.0e-34 |
| pfu_aug2.0_291.1_03957.t1 | gi|617613633|ref|XP_007525498.1| | PREDICTED: caveolin-1 isoform X2 [Erinaceus europaeus] | 6.0e-34 |
| pfu_aug2.0_291.1_03957.t1 | gi|573891147|ref|XP_006633332.1| | PREDICTED: caveolin-1-like isoform X2 [Lepisosteus oculatus] | 7.0e-34 |
Transcript
| Transcript ID | pfu_aug2.0_291.1_03957.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_291.1_03957.t1 atggcgggatccggagagagtgcgtccaatgttagattgaccattggaaatgaacaggtggacactgcagatgtgaccaa aggtcaagaaattgatttgaaagacagagatccagaaaatctaaacgaagatttcaaggtacagtttcatgacatcatcg gtgaaccagaggaaggagttttctcatttgataaaatctggatctacagctttaagacctacaccaacaccaagctgtgg tgttaccgtattaccacgttgatctgtggtataccagtgtcgttttgttggggaatatattttgcctgtctggccttcaa cacaatctggatatgtattcccgccgtgaaggcatacaacctgaagttgcgctgtgcgaagggttgcttcgacagtcttc tggaggcctttgtcaggccgtgttacgaggcatcgggatatatattctataacataaggatttttaaaggacaagtcaga gactga |
|
Protein
| Protein ID | pfu_aug2.0_291.1_03957.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_291.1_03957.t1 MAGSGESASNVRLTIGNEQVDTADVTKGQEIDLKDRDPENLNEDFKVQFHDIIGEPEEGVFSFDKIWIYSFKTYTNTKLW CYRITTLICGIPVSFCWGIYFACLAFNTIWICIPAVKAYNLKLRCAKGCFDSLLEAFVRPCYEASGYIFYNIRIFKGQVR D |
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