Gene
| Gene Model ID | pfu_aug2.0_2912.1_09013 |
|---|---|
| Locus | scaffold2912.1 : 1 ... 6809 : + |
| To GenomeBrowser | scaffold2912.1:1..6809 |
| Genes list of scaffold | scaffold2912.1 |
| Synonym | pfu_aug1.0_16837.1_54346 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2912.1_09013.t1 | 4 | 1 | Ldl_recept_a | 2 | 41 | 1.2e-16 | 60.2 | 1.5e-06 | 0.011 | 15.6 |
| pfu_aug2.0_2912.1_09013.t1 | 4 | 2 | Ldl_recept_a | 46 | 92 | 1.2e-16 | 60.2 | 3.3e-06 | 0.024 | 14.5 |
| pfu_aug2.0_2912.1_09013.t1 | 4 | 3 | Ldl_recept_a | 97 | 135 | 1.2e-16 | 60.2 | 1.5e-08 | 0.00011 | 21.9 |
| pfu_aug2.0_2912.1_09013.t1 | 4 | 4 | Ldl_recept_a | 140 | 178 | 1.2e-16 | 60.2 | 3.6e-10 | 2.7e-06 | 27.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2912.1_09013.t1 | gi|724797713|ref|XP_010362122.1| | PREDICTED: low-density lipoprotein receptor-related protein 1B-like [Rhinopithecus roxellana] | 7.0e-18 |
| pfu_aug2.0_2912.1_09013.t1 | gi|558214172|ref|XP_006108298.1| | PREDICTED: low-density lipoprotein receptor-related protein 1B-like, partial [Myotis lucifugus] | 6.0e-17 |
| pfu_aug2.0_2912.1_09013.t1 | gi|686708649|ref|XP_009235961.1| | PREDICTED: low-density lipoprotein receptor-related protein 1B-like, partial [Pongo abelii] | 8.0e-17 |
| pfu_aug2.0_2912.1_09013.t1 | gi|505841269|ref|XP_004614148.1| | PREDICTED: low-density lipoprotein receptor-related protein 1B [Sorex araneus] | 1.0e-16 |
| pfu_aug2.0_2912.1_09013.t1 | gi|585711700|ref|XP_002741308.2| | PREDICTED: prolow-density lipoprotein receptor-related protein 1-like, partial [Saccoglossus kowalevskii] | 2.0e-16 |
Transcript
| Transcript ID | pfu_aug2.0_2912.1_09013.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2912.1_09013.t1 ctggtacatgtccaccaggatttcgtagatgcactatatcacaaagatgtgtgaggtcagatcattggtgtgacggtaac cgtaaatgtggttcttatgatgatagtgacgaaccaagtggctgtgtccctagtctctgtccttctggatatcggagatg ttccagaagtaaatactgtattctctccaagttttggtgtgacgggaatttagattgtggagaatatttaatggatgatg ttattgataatgatgatagtgatgaaactagtgactgcgagactggtccttgtcatgaaggttatcgtaaatgctctatc tctaaaagatgtctgccattagagttatggtgtaacggagttaatgattgtggaccaggtgatacaagtgatgagccaag tgactgcgagaatttcccatgtcgtccaggatacagaagatgtgcagtctcaaaacattgtgtgccctctgactggtggt gtgacgggaacctggattgtggctttggtgataccagtgatgaaccaaatgattgcgggcttcgagcctactaccttagt taccttccgcctggcaattacagtccggtacgctctccactacaccatctcgaatttacaaaaaaagaagccaagtttct atcgtattggactcgtgatcattag |
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Protein
| Protein ID | pfu_aug2.0_2912.1_09013.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2912.1_09013.t1 GTCPPGFRRCTISQRCVRSDHWCDGNRKCGSYDDSDEPSGCVPSLCPSGYRRCSRSKYCILSKFWCDGNLDCGEYLMDDV IDNDDSDETSDCETGPCHEGYRKCSISKRCLPLELWCNGVNDCGPGDTSDEPSDCENFPCRPGYRRCAVSKHCVPSDWWC DGNLDCGFGDTSDEPNDCGLRAYYLSYLPPGNYSPVRSPLHHLEFTKKEAKFLSYWTRDH |
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