Gene
| Gene Model ID | pfu_aug2.0_2930.1_02295 |
|---|---|
| Locus | scaffold2930.1 : 48766 ... 54782 : + |
| To GenomeBrowser | scaffold2930.1:48766..54782 |
| Genes list of scaffold | scaffold2930.1 |
| Synonym | pfu_aug1.0_18785.1_18571 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cytidine deaminase-like | GO:0003824 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2930.1_02295.t1 | 2 | 1 | dCMP_cyt_deam_2 | 15 | 82 | 3.6e-09 | 36.6 | 3.4e-12 | 1.3e-08 | 34.9 |
| pfu_aug2.0_2930.1_02295.t1 | 1 | 1 | dCMP_cyt_deam_1 | 17 | 112 | 1.1e-18 | 66.7 | 4.0e-22 | 1.5e-18 | 66.3 |
| pfu_aug2.0_2930.1_02295.t1 | 2 | 2 | dCMP_cyt_deam_2 | 133 | 145 | 3.6e-09 | 36.6 | 0.38 | 1400.0 | -0.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2930.1_02295.t1 | gi|597768568|ref|XP_007248113.1| | PREDICTED: cytidine deaminase-like [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_2930.1_02295.t1 | gi|551526614|ref|XP_005814783.1| | PREDICTED: cytidine deaminase-like [Xiphophorus maculatus] | 0.0 |
| pfu_aug2.0_2930.1_02295.t1 | gi|55925253|ref|NP_001007390.1| | uncharacterized protein LOC492517 [Danio rerio] | 0.0 |
| pfu_aug2.0_2930.1_02295.t1 | gi|617397934|ref|XP_007551434.1| | PREDICTED: cytidine deaminase-like [Poecilia formosa] | 0.0 |
| pfu_aug2.0_2930.1_02295.t1 | gi|499023924|ref|XP_004562724.1| | PREDICTED: cytidine deaminase-like [Maylandia zebra] | 1.4013e-45 |
Transcript
| Transcript ID | pfu_aug2.0_2930.1_02295.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2930.1_02295.t1 atgtttcgcgatgtaatgcgtaaagttcgcgttataatgcacaagcgtatccaggacttggtgaaggcagcgatagaggt caaagccaacgcctactgtccttacagcaactttcgtgttggtgcttcactgctgactgaaaacgatgttattgtaacag gctgtaacgtagagaatgcatcttatgggctatctgtttgtgcggaacgagtagctattatgtctgctgtgtcacaaggt cacaccaagttcaaggctgcgacagtttcatgtgacattaaaggagacttcaaagctccgtgtggtgcttgtagacagtt ttatgccgagttcaacttgaaccttgacctttacctagtgaagccagacaatacagcgaaatgtgtcaaaatcagagacg ttttacccatggcgtttacaccgcagtcactcgaggaagacagaatctaa |
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Protein
| Protein ID | pfu_aug2.0_2930.1_02295.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2930.1_02295.t1 MFRDVMRKVRVIMHKRIQDLVKAAIEVKANAYCPYSNFRVGASLLTENDVIVTGCNVENASYGLSVCAERVAIMSAVSQG HTKFKAATVSCDIKGDFKAPCGACRQFYAEFNLNLDLYLVKPDNTAKCVKIRDVLPMAFTPQSLEEDRI |
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