Gene
| Gene Model ID | pfu_aug2.0_297.1_23819 |
|---|---|
| Locus | scaffold297.1 : 50314 ... 56075 : - |
| To GenomeBrowser | scaffold297.1:50314..56075 |
| Genes list of scaffold | scaffold297.1 |
| Synonym | pfu_aug1.0_174788.1_06751 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ubiquitin-like-conjugating enzyme atg3 isoform x2 | GO:0000045 GO:0005515 GO:0005829 GO:0006464 GO:0019776 GO:0019777 GO:0043653 GO:0070735 GO:1902017 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_297.1_23819.t1 | 1 | 1 | Autophagy_N | 8 | 38 | 3.7e-08 | 33.2 | 1.2e-11 | 5.7e-08 | 32.6 |
| pfu_aug2.0_297.1_23819.t1 | 2 | 1 | Autophagy_act_C | 9 | 35 | 1.9e-23 | 82.3 | 0.16 | 780.0 | 0.3 |
| pfu_aug2.0_297.1_23819.t1 | 2 | 2 | Autophagy_act_C | 71 | 184 | 1.9e-23 | 82.3 | 2.2e-26 | 1.1e-22 | 79.9 |
| pfu_aug2.0_297.1_23819.t1 | 1 | 1 | Autophagy_Cterm | 205 | 229 | 5.2e-15 | 54.2 | 1.7e-18 | 8.6e-15 | 53.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_297.1_23819.t1 | gi|676453252|ref|XP_009053295.1| | hypothetical protein LOTGIDRAFT_116221 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_297.1_23819.t1 | gi|149060432|gb|EDM11146.1| | APG3 autophagy 3-like (S. cerevisiae), isoform CRA_b [Rattus norvegicus] | 0.0 |
| pfu_aug2.0_297.1_23819.t1 | gi|568996097|ref|XP_006522558.1| | PREDICTED: ubiquitin-like-conjugating enzyme ATG3 isoform X1 [Mus musculus] | 0.0 |
| pfu_aug2.0_297.1_23819.t1 | gi|731491314|ref|XP_010591262.1| | PREDICTED: ubiquitin-like-conjugating enzyme ATG3 isoform X2 [Loxodonta africana] | 0.0 |
| pfu_aug2.0_297.1_23819.t1 | gi|667274477|ref|XP_008572003.1| | PREDICTED: ubiquitin-like-conjugating enzyme ATG3 [Galeopterus variegatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_297.1_23819.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_297.1_23819.t1 atgcagaatgtcattaatgctgtcaaaggaaccgcactgggtgtggctgaaatgcttacacctgtgctgaaggaatcaaa gtttaaagaaactggagttttaacaccagaagaagcgacactggatgccaaagttattcaaagacaagaatcagagggag cccaaggaacagaaagtggtgtgctacaaactagaacttatgaccttaatataacctacgataaatattaccaaacacct cgactatggctgttcggttatgatgagaataggaaacctttaacagtagaacaaatgtatgaagattttagtcaagatca tgccaagaaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnggttaccatggaaacacatcccaatttacctggtccaccaatggcatcagtccatccatgcagacatgctga ggtgatgaagaaaataatacagatggtagctgatgggggaggtgacctgggagtccatgtatatttgatgatctttttga agtttgtacaagctgtgataccaacaatagagtatgattataccagacactttatcatgtga |
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Protein
| Protein ID | pfu_aug2.0_297.1_23819.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_297.1_23819.t1 MQNVINAVKGTALGVAEMLTPVLKESKFKETGVLTPEEATLDAKVIQRQESEGAQGTESGVLQTRTYDLNITYDKYYQTP RLWLFGYDENRKPLTVEQMYEDFSQDHAKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXVTMETHPNLPGPPMASVHPCRHAEVMKKIIQMVADGGGDLGVHVYLMIFLKFVQAVIPTIEYDYTRHFIM |
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