Gene
| Gene Model ID | pfu_aug2.0_297.1_23829 |
|---|---|
| Locus | scaffold297.1 : 209154 ... 225977 : + |
| To GenomeBrowser | scaffold297.1:209154..225977 |
| Genes list of scaffold | scaffold297.1 |
| Synonym | pfu_aug1.0_115.1_07392 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| eukaryotic initiation factor 4a-ii-like | GO:0003743 GO:0004386 GO:0005524 GO:0006413 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_297.1_23829.t1 | 4 | 1 | Helicase_C | 40 | 54 | 1.1e-26 | 92.4 | 4.5 | 6000.0 | -2.9 |
| pfu_aug2.0_297.1_23829.t1 | 1 | 1 | DEAD | 144 | 309 | 1.20512e-43 | 148.5 | 0.0 | 2.49431e-43 | 147.4 |
| pfu_aug2.0_297.1_23829.t1 | 4 | 2 | Helicase_C | 229 | 238 | 1.1e-26 | 92.4 | 8.2 | 11000.0 | -3.7 |
| pfu_aug2.0_297.1_23829.t1 | 4 | 3 | Helicase_C | 299 | 325 | 1.1e-26 | 92.4 | 0.8 | 1100.0 | -0.5 |
| pfu_aug2.0_297.1_23829.t1 | 4 | 4 | Helicase_C | 384 | 456 | 1.1e-26 | 92.4 | 1.8e-29 | 2.4e-26 | 91.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_297.1_23829.t1 | gi|524892590|ref|XP_005102822.1| | PREDICTED: eukaryotic initiation factor 4A-II-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_297.1_23829.t1 | gi|675865852|ref|XP_009018486.1| | hypothetical protein HELRODRAFT_185641 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_297.1_23829.t1 | gi|585718505|ref|XP_006825894.1| | PREDICTED: eukaryotic initiation factor 4A-II-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_297.1_23829.t1 | gi|241047288|ref|XP_002407236.1| | translation initiation factor 4F, helicase subunit, putative [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_297.1_23829.t1 | gi|260800652|ref|XP_002595212.1| | hypothetical protein BRAFLDRAFT_238703 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_297.1_23829.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_297.1_23829.t1 atgacaatttctcacgctagttttagaaagagggagagaaacgaatcagagcaaaatctaatacaagaaataaatgacat cgaagaacgaaatgatccaagtgatattaatactttgcaagagaagaaaaaagaattggagagctttagacaacaaaaac ttaaaggtcatctactaagagcaagggagcgcaataatgtagacgttcctttattcgcggtacacagcgagaacatgtca tataattcggaagatggagataggtctcaacaagtgagatcggaaggtgacgttaaggaagagtatgtcccagaagcagg tggtctcattgagagcaactgggatgaagttgttgacagttttgatgatatgcatttgagggaagagttactcagaggaa tttatgcctatggatttgagaaaccctcggctattcaacagagagctattattccttgtcttaaaggaaaggatgtgata gctcaagcccagtctggtactggaaaaacagccactttctccattgcaattcttcagcagcttcaagtacagtcacctga caggaaagaatgtcaagcccttgtcttggctccgacccgggaacttgcccaacagattcagaaagtagtgatagcactag gagattatttagatgcatcctgccatgcatgtataggtggcaccaatgttaaagaggatatacatcggcttggtgcaggt gtagatatcgtggttgggacaccaggacgtgttcatgacatgattaatagaagggcattgaatcccagatcgatacggat gtttgtccttgatgaggccgatgaaatgttgtcgcgaggtttcaaagatcagatctacgatgtgtttagattcatgcctc aagaaactcaggtaatcctgttgtctgccaccatgcctgctgaggtgttagaggtcaccaagaggttcatgagggatcca atcaggattctcgtcaagaaagaggaacttacccttgagggtatccgacagttctacattcaagtagaaagagaggaatg gaaactggataccttgtgtgatttatacgagacattaactataactcaagctgttatattctgtaatacaagaaggaagg tagactggcttacagacaagatgttgagcagggattttacagtttctgccatgcacggagacatggatcaaaaggagcgt gatgtaatcatgcgtgagttcaggaccggttctagtcgtgtgctcattactacagatctgctagctcgtggtatagatgt acagcaagtatctcttgtcatcaactacgatctacccgccaacagggaaaactacatacacagaattggacgtggtggtc gatttggacgtaaaggtgttgccataaacttcgttacacaagatgacgtccgtacattgcgtgatatagaacagttttac aacactcaaattgaagaaatgcccatgaatgtagctgatttgatctaa |
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Protein
| Protein ID | pfu_aug2.0_297.1_23829.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_297.1_23829.t1 MTISHASFRKRERNESEQNLIQEINDIEERNDPSDINTLQEKKKELESFRQQKLKGHLLRARERNNVDVPLFAVHSENMS YNSEDGDRSQQVRSEGDVKEEYVPEAGGLIESNWDEVVDSFDDMHLREELLRGIYAYGFEKPSAIQQRAIIPCLKGKDVI AQAQSGTGKTATFSIAILQQLQVQSPDRKECQALVLAPTRELAQQIQKVVIALGDYLDASCHACIGGTNVKEDIHRLGAG VDIVVGTPGRVHDMINRRALNPRSIRMFVLDEADEMLSRGFKDQIYDVFRFMPQETQVILLSATMPAEVLEVTKRFMRDP IRILVKKEELTLEGIRQFYIQVEREEWKLDTLCDLYETLTITQAVIFCNTRRKVDWLTDKMLSRDFTVSAMHGDMDQKER DVIMREFRTGSSRVLITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTQDDVRTLRDIEQFY NTQIEEMPMNVADLI |
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