Gene
| Gene Model ID | pfu_aug2.0_297.1_23830 |
|---|---|
| Locus | scaffold297.1 : 229114 ... 233036 : + |
| To GenomeBrowser | scaffold297.1:229114..233036 |
| Genes list of scaffold | scaffold297.1 |
| Synonym | pfu_aug1.0_115.1_07391 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| eukaryotic initiation factor 4a-i | GO:0003743 GO:0004386 GO:0005524 GO:0005829 GO:0006413 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_297.1_23830.t1 | 2 | 1 | DEAD | 102 | 265 | 2.2e-38 | 131.3 | 1.6e-41 | 4.6e-38 | 130.3 |
| pfu_aug2.0_297.1_23830.t1 | 2 | 1 | Helicase_C | 254 | 280 | 9.1e-26 | 89.5 | 0.46 | 1400.0 | -0.8 |
| pfu_aug2.0_297.1_23830.t1 | 2 | 2 | Helicase_C | 336 | 411 | 9.1e-26 | 89.5 | 1.5e-28 | 4.5e-25 | 87.3 |
| pfu_aug2.0_297.1_23830.t1 | 2 | 2 | DEAD | 337 | 373 | 2.2e-38 | 131.3 | 2.4 | 7100.0 | -3.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_297.1_23830.t1 | gi|19115766|ref|NP_594854.1| | translation initiation factor eIF4A (predicted) [Schizosaccharomyces pombe 972h-] | 0.0 |
| pfu_aug2.0_297.1_23830.t1 | gi|213410166|ref|XP_002175853.1| | translation initiation factor eIF4A [Schizosaccharomyces japonicus yFS275] | 0.0 |
| pfu_aug2.0_297.1_23830.t1 | gi|350421455|ref|XP_003492849.1| | PREDICTED: eukaryotic initiation factor 4A-I [Bombus impatiens] | 0.0 |
| pfu_aug2.0_297.1_23830.t1 | gi|749796027|ref|XP_011151421.1| | PREDICTED: eukaryotic initiation factor 4A-I [Harpegnathos saltator] | 0.0 |
| pfu_aug2.0_297.1_23830.t1 | gi|66551115|ref|XP_623285.1| | PREDICTED: eukaryotic initiation factor 4A-like isoformX2 [Apis mellifera] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_297.1_23830.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_297.1_23830.t1 atgagtttaacagaaactaaagtaacagaaggttactccgataaaacacccgagactcgttctcacgagggcaacgcccc tccccacggggagaaaaaaagggatcctattgactggagtgctgacaacacagaactagatccacagaccgaggaccaat acggatcgaacttcaagaatgtgcaacaagatgggaacaccgaagtcaaggaagagtatggagaggcacaggaatttgat cagatgggcctggctgacgaactcctgaaggggatatatgcctatgggtacgagaaaccctccatgatccaacaaaaggc cataccacaatgtcttacagggcgtgatgtgatagcacaggctcagtccggtactggtaagacagccacgttctccgtgg gcgtgcttcagagactggacattgaggacaagagatgccaagccctcattctggcccccaccagggaactagccatccag acccatcgtgtggtgacagcccttggggactatatgggtgtggtatgtcacgcctttgtgggaggacgcagagtcagcga ggacgtggccatgatccgccgtggaatccatgtgggtatcgccacccccgggaggatgatgcatctcttgggaaagaaat tcatagacccagagagcattcgtatgtttgtgatggacgaagctgatgagatgttgtccaaaggattcctggatcaaata tacgatctgttccagtttcttcccagagaaatccaggtgatccttgtgtctgccaccatgccaagggaaatcatggatat cacctcacgcttcatgaacaacccagtaaagattctagtaaagaacgaagagcttacactcagtggtatacaccagttct atgtcaacgtcgaacgagaggattggaagtttgagacgctgtgtgacttatacgaggccatctccattaaacagtcggtg atattctgtaacagtcggcgtaacgtagagtggctaacccaagccctcgatgacagagacttcacggtgtcatctgtgca tggggatatgagccaggatacaagggagaccatcatgcacggcttccgtaccggctccagtcgtgtactgatcactacag acctactggccaggggtatagatgtacaacaagtgtccttggtactcaactatgacctacccatagatagggaatcctac atacacagaattggtcgcggtggcagatttggtcgaaagggtgtggccatcaactttgtgaccaatgacaacctaagaca actgagagagctggagcagttctacaacacccagatcgaggaaatgccaaggaacatagctgatgttatagagccctatt ga |
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Protein
| Protein ID | pfu_aug2.0_297.1_23830.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_297.1_23830.t1 MSLTETKVTEGYSDKTPETRSHEGNAPPHGEKKRDPIDWSADNTELDPQTEDQYGSNFKNVQQDGNTEVKEEYGEAQEFD QMGLADELLKGIYAYGYEKPSMIQQKAIPQCLTGRDVIAQAQSGTGKTATFSVGVLQRLDIEDKRCQALILAPTRELAIQ THRVVTALGDYMGVVCHAFVGGRRVSEDVAMIRRGIHVGIATPGRMMHLLGKKFIDPESIRMFVMDEADEMLSKGFLDQI YDLFQFLPREIQVILVSATMPREIMDITSRFMNNPVKILVKNEELTLSGIHQFYVNVEREDWKFETLCDLYEAISIKQSV IFCNSRRNVEWLTQALDDRDFTVSSVHGDMSQDTRETIMHGFRTGSSRVLITTDLLARGIDVQQVSLVLNYDLPIDRESY IHRIGRGGRFGRKGVAINFVTNDNLRQLRELEQFYNTQIEEMPRNIADVIEPY |
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