Gene
| Gene Model ID | pfu_aug2.0_297.1_23835 |
|---|---|
| Locus | scaffold297.1 : 319040 ... 329653 : - |
| To GenomeBrowser | scaffold297.1:319040..329653 |
| Genes list of scaffold | scaffold297.1 |
| Synonym | pfu_aug1.0_742.1_58236 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_297.1_23835.t1 | 1 | 1 | NTF2 | 23 | 102 | 1.6e-23 | 83.2 | 9.6e-27 | 2.9e-23 | 82.5 |
| pfu_aug2.0_297.1_23835.t1 | 1 | 1 | RRM_1 | 332 | 392 | 4.1e-15 | 55.1 | 2.4e-18 | 7.0e-15 | 54.4 |
| pfu_aug2.0_297.1_23835.t1 | 1 | 1 | RRM_6 | 332 | 397 | 3.3e-12 | 46.1 | 1.9e-15 | 5.7e-12 | 45.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_297.1_23835.t1 | gi|676428553|ref|XP_009045313.1| | hypothetical protein LOTGIDRAFT_110043 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_297.1_23835.t1 | gi|524910421|ref|XP_005110089.1| | PREDICTED: ras GTPase-activating protein-binding protein 2-like isoform X3 [Aplysia californica] | 0.0 |
| pfu_aug2.0_297.1_23835.t1 | gi|524910419|ref|XP_005110088.1| | PREDICTED: ras GTPase-activating protein-binding protein 2-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_297.1_23835.t1 | gi|524910417|ref|XP_005110087.1| | PREDICTED: ras GTPase-activating protein-binding protein 2-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_297.1_23835.t1 | gi|260802590|ref|XP_002596175.1| | hypothetical protein BRAFLDRAFT_203026 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_297.1_23835.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_297.1_23835.t1 atgttacagattttacagtcacaactccagttttgtacacggtggagtagaaaaccaggagaagaacaacctcctgttat gggacaagctgacatccataagaaaatcatgtccctgaacttccgtgactgtcatgccaagatacgccaggtggatagtc aagctacagtagggaatgctgtagttgtacaggtaacaggagagttgtctaacaacggtcaacccatgagaaggtttatg cagacctttgtactggctccccagtcaccaaagaagtactacgtccacaacgatatcttccgctatcaggacgaggtttt ccatgacgatagtgatatggaaaatcaagatgaagatgtttacaatggtaaattgtataatatagattctgatgtggaga ctgttgagccaccagcacagtcacaggaagtcacacctgaccccagtgtaccacagtactttgaacaacctcctctaagc aatggtactgtccatatggaggagcgtgtggattcaccatcccagcggtcactagaggaggagaaggaggaggaattaga acctgaggagccattagaggagaaggtagtgatggaggagcctgtaccagtagatacagagccagaggtggtggaggagg aaccacaaaatgtctctgaacaaaaaacattttcctgggcagcaatggctagtaagaatgctaacacaggtgcaccctcc atgcctccccagcagccaagtcctatgatgtcacaaggctttggtaagccagcatccatggcaccaatgtcacgacctga ggtcaagggggataccagccctcagtcaggaggcttaccacagccacagagagggccaaggccacagagagataggatga gagagcgtgacagaacaagtatgggacgagatgacggagacagtgatagtgtaagtggacggagaggtccgagttcctcc atgccgtcaactcgcttccctgacagccatcaactctttgtaggaaatctcccccacaatgtacaagagagggaactcag agatttctttgaaaagtatggtaatgtagtggaactgagaataaatacaaaaggagctggtggaaaattacctaattttg gttttgtggtttttgatagtgacatgcctgtacaggagatcttgaggcaaaagcctatcaagtttaatggagaccatcgt ctgaatgttgaggagaaaaagccgcgcggaggagacggtcccagaccagggagtggtagaggaggtccacctcgcggagg aatgggagggcgtggtggtatgggaatgatgggaagaggtgggatgggaggtcgtgggggtatgggcggtggccgacctg acagaggcagcatggggggtgggagaggggccgatgaggttgtagatttccttttggcccaatggatggttccattgttg aatctttacctgtatccctaa |
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Protein
| Protein ID | pfu_aug2.0_297.1_23835.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_297.1_23835.t1 MLQILQSQLQFCTRWSRKPGEEQPPVMGQADIHKKIMSLNFRDCHAKIRQVDSQATVGNAVVVQVTGELSNNGQPMRRFM QTFVLAPQSPKKYYVHNDIFRYQDEVFHDDSDMENQDEDVYNGKLYNIDSDVETVEPPAQSQEVTPDPSVPQYFEQPPLS NGTVHMEERVDSPSQRSLEEEKEEELEPEEPLEEKVVMEEPVPVDTEPEVVEEEPQNVSEQKTFSWAAMASKNANTGAPS MPPQQPSPMMSQGFGKPASMAPMSRPEVKGDTSPQSGGLPQPQRGPRPQRDRMRERDRTSMGRDDGDSDSVSGRRGPSSS MPSTRFPDSHQLFVGNLPHNVQERELRDFFEKYGNVVELRINTKGAGGKLPNFGFVVFDSDMPVQEILRQKPIKFNGDHR LNVEEKKPRGGDGPRPGSGRGGPPRGGMGGRGGMGMMGRGGMGGRGGMGGGRPDRGSMGGGRGADEVVDFLLAQWMVPLL NLYLYP |
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