Gene
| Gene Model ID | pfu_aug2.0_298.1_27188 |
|---|---|
| Locus | scaffold298.1 : 233962 ... 271537 : - |
| To GenomeBrowser | scaffold298.1:233962..271537 |
| Genes list of scaffold | scaffold298.1 |
| Synonym | pfu_aug1.0_1946.1_44197 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_298.1_27188.t1 | 6 | 1 | LRR_8 | 53 | 111 | 3.7e-35 | 119.4 | 1.8e-16 | 2.6e-13 | 49.4 |
| pfu_aug2.0_298.1_27188.t1 | 3 | 1 | LRR_5 | 53 | 167 | 5.3e-12 | 45.5 | 1.0e-10 | 1.5e-07 | 31.1 |
| pfu_aug2.0_298.1_27188.t1 | 4 | 1 | LRR_4 | 53 | 91 | 2.3e-08 | 33.4 | 5.3e-06 | 0.0078 | 15.8 |
| pfu_aug2.0_298.1_27188.t1 | 4 | 2 | LRR_4 | 75 | 115 | 2.3e-08 | 33.4 | 0.00026 | 0.39 | 10.4 |
| pfu_aug2.0_298.1_27188.t1 | 6 | 2 | LRR_8 | 81 | 131 | 3.7e-35 | 119.4 | 2.8e-12 | 4.1e-09 | 36.0 |
| pfu_aug2.0_298.1_27188.t1 | 3 | 2 | LRR_5 | 89 | 205 | 5.3e-12 | 45.5 | 3.4e-08 | 5.0e-05 | 23.0 |
| pfu_aug2.0_298.1_27188.t1 | 6 | 3 | LRR_8 | 100 | 158 | 3.7e-35 | 119.4 | 2.7e-13 | 4.1e-10 | 39.2 |
| pfu_aug2.0_298.1_27188.t1 | 4 | 3 | LRR_4 | 100 | 139 | 2.3e-08 | 33.4 | 1.8e-06 | 0.0027 | 17.2 |
| pfu_aug2.0_298.1_27188.t1 | 6 | 4 | LRR_8 | 125 | 182 | 3.7e-35 | 119.4 | 3.4e-12 | 5.1e-09 | 35.7 |
| pfu_aug2.0_298.1_27188.t1 | 4 | 4 | LRR_4 | 125 | 162 | 2.3e-08 | 33.4 | 6.3e-06 | 0.0093 | 15.5 |
| pfu_aug2.0_298.1_27188.t1 | 6 | 5 | LRR_8 | 148 | 203 | 3.7e-35 | 119.4 | 1.0e-05 | 0.015 | 15.0 |
| pfu_aug2.0_298.1_27188.t1 | 6 | 6 | LRR_8 | 243 | 257 | 3.7e-35 | 119.4 | 2.9 | 4300.0 | -2.5 |
| pfu_aug2.0_298.1_27188.t1 | 3 | 3 | LRR_5 | 247 | 256 | 5.3e-12 | 45.5 | 5.7 | 8500.0 | -3.7 |
| pfu_aug2.0_298.1_27188.t1 | 1 | 1 | Y_phosphatase | 433 | 665 | 0.0 | 183.8 | 0.0 | 0.0 | 182.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_298.1_27188.t1 | gi|662204772|ref|XP_008475773.1| | PREDICTED: tyrosine-protein phosphatase 10D-like [Diaphorina citri] | 4.0e-39 |
| pfu_aug2.0_298.1_27188.t1 | gi|632971055|ref|XP_007901984.1| | PREDICTED: receptor-type tyrosine-protein phosphatase beta [Callorhinchus milii] | 5.0e-37 |
| pfu_aug2.0_298.1_27188.t1 | gi|556971208|ref|XP_005994043.1| | PREDICTED: receptor-type tyrosine-protein phosphatase beta [Latimeria chalumnae] | 6.0e-37 |
| pfu_aug2.0_298.1_27188.t1 | gi|224587223|gb|ACN58623.1| | Receptor-type tyrosine-protein phosphatase beta precursor [Salmo salar] | 1.0e-36 |
| pfu_aug2.0_298.1_27188.t1 | gi|742231371|ref|XP_010901211.1| | PREDICTED: receptor-type tyrosine-protein phosphatase beta-like [Esox lucius] | 2.0e-36 |
Transcript
| Transcript ID | pfu_aug2.0_298.1_27188.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_298.1_27188.t1 atgggtatgagaaggtactcttcattcctccttagtaccattgctgtggtattgatgttgtttcaatatgtggaaacatc attagtagactccgatggcacgtttttgtatgggagcaatcggagccttacagagctaccaagccttccgtttactctta ctacaatatacctgtcgaaaaatttgatttctactatagacaggggtgcttttaaagatttgaagaatctcaggatatga tacctgtcgaaaaatttgatttctactatagacaggggtgcttttaaagatttgaagaatctcaggatatgtgatctatc ttacaactccatagtgtcgttgagtgaagatctgttccgaaatatgccatttctccgaatattgcgactgcaaagaaacc gcttgacgactcttccaagatcaatattccatggtttaaccgcacttatggaactgcaattgtctttcaactccttcaga aattttgagcgaggactttttgacgatttgctttccttcaatgatatgcaattgtctttcaactccttcagaaattttga gcgaggactttttgacgatttgctttccttcaatgatattcgaattcataccaacaacttcgtatgtgattgctatttgg agtaccttgtaacatgggtaaagactgtcatgcagtttagacaactcggtgcgggccttttgttctgtgatgattcaacg actgcacttgtaacacttccggatgattatttcgattcctgtaaagaaatggaaaatggagctctatgtgacgggtcatc gctatggtgcaagaattcaagcatttgtatcaacggaatctgtgggtgccgcagcggtttctatgacgacaacggtaaca ctactggtggagtttgcagagaagtgtacgaggtcccaacagagatctggatcatagtggctgtaggtgggacctttctt atctccacatcggtctttctgttacatattttcagaaagaaagcacaaaagagaaaacagcatatggatatcacagaaga agactcgagatatgtggatctaaagagtattgttataaaaccaactcaaccaagattgcggatgaagcgtaatgactttg atgaataccaatctatgagccagttatcagacccaaccaaaagacctcttgacatcaacattgtacagaacaatcagtta atggaaaaatggatcgctactgtcttaccagacgaatgggagaaattgaaagaactgactcaacggtatccttttgagga cgctgtttctgaaaagaacaagttcaagaaccgtgatatgggctgtattccatatgatatgaatagagtgaaactggacg ttggagaagatgactacatcaatgccagttacatatcgggttgctggtctgtgatagactatatcagcacacagtcacca atgcagaatactgtcttagacttcatgcacatgatctgggaacaagatgttaagattataataaatctatccggctatca agatgaggacgaggaacaggatcatgccgacataaagtactgggcaaacgagcaggatgctactgtaaaattcggtttat attccgtacaaacaaaaatgattgtaaaggctagtaaaactgttattcgtcgactgcgcattacacgaaagaaggagtcg cgagttgttacacagtgtcacttactcgaatggacgtcgttcaacacggaagtttgctctactcttgtagacttcgtaca gttggtctggaaaaatgtggaggaaaaagaagagattgagagtaaaattgttcactgcagcactggttccggtcgtacgg gtgtattcattgccctcgatatgctactacaagatcttgtttctgaatcttccaatggcaacattgacattttcgactta accctgggcatgcgtaatcaaagaccgagaataattgaagaagagtgtcagtaccttttcctccatgaatgcatacgctt cttcttggaagaaaaggcaagagcattgcaaagagaagtggtggaaaataagaaaatccgagattatttggaattttaa |
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Protein
| Protein ID | pfu_aug2.0_298.1_27188.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_298.1_27188.t1 MGMRRYSSFLLSTIAVVLMLFQYVETSLVDSDGTFLYGSNRSLTELPSLPFTLTTIYLSKNLISTIDRGAFKDLKNLRIX YLSKNLISTIDRGAFKDLKNLRICDLSYNSIVSLSEDLFRNMPFLRILRLQRNRLTTLPRSIFHGLTALMELQLSFNSFR NFERGLFDDLLSFNDMQLSFNSFRNFERGLFDDLLSFNDIRIHTNNFVCDCYLEYLVTWVKTVMQFRQLGAGLLFCDDST TALVTLPDDYFDSCKEMENGALCDGSSLWCKNSSICINGICGCRSGFYDDNGNTTGGVCREVYEVPTEIWIIVAVGGTFL ISTSVFLLHIFRKKAQKRKQHMDITEEDSRYVDLKSIVIKPTQPRLRMKRNDFDEYQSMSQLSDPTKRPLDINIVQNNQL MEKWIATVLPDEWEKLKELTQRYPFEDAVSEKNKFKNRDMGCIPYDMNRVKLDVGEDDYINASYISGCWSVIDYISTQSP MQNTVLDFMHMIWEQDVKIIINLSGYQDEDEEQDHADIKYWANEQDATVKFGLYSVQTKMIVKASKTVIRRLRITRKKES RVVTQCHLLEWTSFNTEVCSTLVDFVQLVWKNVEEKEEIESKIVHCSTGSGRTGVFIALDMLLQDLVSESSNGNIDIFDL TLGMRNQRPRIIEEECQYLFLHECIRFFLEEKARALQREVVENKKIRDYLEF |
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