Gene
| Gene Model ID | pfu_aug2.0_298.1_27189 |
|---|---|
| Locus | scaffold298.1 : 303836 ... 339237 : - |
| To GenomeBrowser | scaffold298.1:303836..339237 |
| Genes list of scaffold | scaffold298.1 |
| Synonym | pfu_aug1.0_6032.1_02152 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_298.1_27189.t1 | 2 | 1 | 7tm_1 | 55 | 315 | 4.60046e-42 | 143.9 | 2.8026e-45 | 4.60046e-42 | 143.9 |
| pfu_aug2.0_298.1_27189.t1 | 3 | 1 | LRR_8 | 375 | 432 | 1.2e-13 | 50.5 | 3.0e-08 | 4.9e-05 | 22.9 |
| pfu_aug2.0_298.1_27189.t1 | 2 | 1 | LRR_5 | 375 | 480 | 1.0e-08 | 34.9 | 2.5e-11 | 4.1e-08 | 32.9 |
| pfu_aug2.0_298.1_27189.t1 | 3 | 2 | LRR_8 | 423 | 480 | 1.2e-13 | 50.5 | 2.2e-12 | 3.7e-09 | 36.2 |
| pfu_aug2.0_298.1_27189.t1 | 3 | 3 | LRR_8 | 517 | 532 | 1.2e-13 | 50.5 | 0.48 | 790.0 | -0.1 |
| pfu_aug2.0_298.1_27189.t1 | 2 | 2 | LRR_5 | 518 | 532 | 1.0e-08 | 34.9 | 0.39 | 640.0 | 0.0 |
| pfu_aug2.0_298.1_27189.t1 | 1 | 1 | Y_phosphatase | 650 | 843 | 5.7e-39 | 133.8 | 6.00036e-42 | 9.9e-39 | 133.0 |
| pfu_aug2.0_298.1_27189.t1 | 2 | 2 | 7tm_1 | 703 | 745 | 4.60046e-42 | 143.9 | 1.4 | 2200.0 | -2.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_298.1_27189.t1 | gi|530640577|ref|XP_005307049.1| | PREDICTED: probable G-protein coupled receptor 45 [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_298.1_27189.t1 | gi|564252219|ref|XP_006265144.1| | PREDICTED: high-affinity lysophosphatidic acid receptor-like [Alligator mississippiensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_298.1_27189.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_298.1_27189.t1 atgtcaacgttgcctgactctctgcaacgtaatgcatcctttggcgcgcaaagctttctttcgcctactggtaacgactc taccttatccatatttcttccgttatacttaaaggtcccattagggacatttctcatcgcaatcattgctgcctcagtga ttggcaatgctatcgtctgcttcatcgtatatccaaagccggccatgagatcctccataaacctactgttggcaaatatg gcgctgagtgacgtagggatcacatgcttttgtatgccgttctccttcgttactttagtcacagatgaatggacgatagg cagtccattatgtcgtttgctactcttctttcaagagtgctttatctgcgcaggctcctggaccattcttataatcagca tcgacagatattgtatcatcgtttggagaaaggaccgactcacaagctatcgcgccaagaaactcatcggatgcatctgg ataggggctttcttgctgagtttcccacctttggttggattcggagacttcaaattctctcccggctacactcaatgtta catcggcaacgactggtctacctcacaatttggctttcttcttctgaaaatgagtactacatacttcctaccgatcttgg cgatgacattcgcatatatatgcatcttgatcagagtacagaaaaacaaaatgaaagtctccatacagagacagaatgat ttcgccgttgcttactataacgagaaacttggtctccctgttatatcattcccaagacgtgaccaccctttaaagcagcg gtcatttcgaacagtactgaaattgtatgtaatcttcactgtatgctggatacctttcgctatctttgccgtcacaaggg acgaaaagcaaaatggacaacatgtaatctatacactgatgctatggataggatttttgaaggccatgcatctagtcaat ttgacttttactgaacaaaaagaactggattcaacaaacgacgattttcacattaacgcaggccttgcctatatcaaagg aaatgaaccctgtatgctagatacacgaaattacaaatgtcaaggctacaacctaacgtcgatcacacagaacattccaa catcgatagaacgaattaatttgaaccataaccagataagtgctgtaagaaaaagggatcttgcaactctgataaattta gtagatcttgacttatccaacaacgttttaagaagactgcctgaaaatgtatttgaaaagaacattaatatcaaaagcat aagcctacgttctaacatactggtttccataccaaagaggacattccgaggacacacgttcctgtcagatatcgaccttt cacttaaccagctgacatcaattacatggaatgcgtttgacgatcttccttccttgaaaaatgtaatgctccatagcaac ccttaccattgtgactgttacataaagtacctttatgactggatacgaaatgtacagtttttcattaaaccttctgctga ggccgcatcctgtgtcgatacaggacaactaatccaaaatctaggagacgacttctttgagatgtgccagaaccttggca atgatgaaaaatgtgacgaagcacacacatgtcggtctttacgaacatgtagcacaggaatttgcaagtgttcgattggt ttctatgatgacaatggtgccatcttcggcggtgattgtagagcttcaaataggtcacaaaaagcaagagaaatgaagag aaaacgagaaaggttgcaaaaaatcttaagcataaattcaaatgaaaccattggagacacttaccaaacgtttgacgagg aggagaaatatttatcaaggctaattccagtgagtgaattcgagcaaaagatggagctataccacaaggactcagatatg aagtttgccctggaatgggagggaaatcattcaaagatcgattatattgctgcccagtctccactgaaaggtactcttca acaattttggcaagtaatatgggaccaggatgtaggagttatagtcgatgtgacgtatgagaaggaagacgagatttacc aatgttactgggagagtaaaggtagcgtttccatcttcggcagcttcacaatagacatattgtcatctgcgaatatgtct aataccctcattaattatttgaaagtgacgcggcgaagacgatcgaagacagtgacgcattataagtttacaggatggaa atcattctcattggatcgttgttcaacaatggttgacttcctccttctcgtccattcaaacgagacgagtgaattgtctc ctacctctaaaattataattagtagaacaggttctgagcgtacaggtgtattcattgcactagacataatcatcggtaaa ctgaaggaaggaaacaaatcgatgttggaacagaatatagacatttactctattgttttgagaatgagaaatgaaaggat gaaaatgattgcagaagaggagcagtatattttcgtttatgaatgcgtaaagtattacctggaaactactggaaaacgac ccagcaagaagacgtcaaaggaaattatagaacaaaatgtttatcttgaactgtaa |
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Protein
| Protein ID | pfu_aug2.0_298.1_27189.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_298.1_27189.t1 MSTLPDSLQRNASFGAQSFLSPTGNDSTLSIFLPLYLKVPLGTFLIAIIAASVIGNAIVCFIVYPKPAMRSSINLLLANM ALSDVGITCFCMPFSFVTLVTDEWTIGSPLCRLLLFFQECFICAGSWTILIISIDRYCIIVWRKDRLTSYRAKKLIGCIW IGAFLLSFPPLVGFGDFKFSPGYTQCYIGNDWSTSQFGFLLLKMSTTYFLPILAMTFAYICILIRVQKNKMKVSIQRQND FAVAYYNEKLGLPVISFPRRDHPLKQRSFRTVLKLYVIFTVCWIPFAIFAVTRDEKQNGQHVIYTLMLWIGFLKAMHLVN LTFTEQKELDSTNDDFHINAGLAYIKGNEPCMLDTRNYKCQGYNLTSITQNIPTSIERINLNHNQISAVRKRDLATLINL VDLDLSNNVLRRLPENVFEKNINIKSISLRSNILVSIPKRTFRGHTFLSDIDLSLNQLTSITWNAFDDLPSLKNVMLHSN PYHCDCYIKYLYDWIRNVQFFIKPSAEAASCVDTGQLIQNLGDDFFEMCQNLGNDEKCDEAHTCRSLRTCSTGICKCSIG FYDDNGAIFGGDCRASNRSQKAREMKRKRERLQKILSINSNETIGDTYQTFDEEEKYLSRLIPVSEFEQKMELYHKDSDM KFALEWEGNHSKIDYIAAQSPLKGTLQQFWQVIWDQDVGVIVDVTYEKEDEIYQCYWESKGSVSIFGSFTIDILSSANMS NTLINYLKVTRRRRSKTVTHYKFTGWKSFSLDRCSTMVDFLLLVHSNETSELSPTSKIIISRTGSERTGVFIALDIIIGK LKEGNKSMLEQNIDIYSIVLRMRNERMKMIAEEEQYIFVYECVKYYLETTGKRPSKKTSKEIIEQNVYLEL |
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