Gene
| Gene Model ID | pfu_aug2.0_2988.1_29001 |
|---|---|
| Locus | scaffold2988.1 : 1 ... 29600 : + |
| To GenomeBrowser | scaffold2988.1:1..29600 |
| Genes list of scaffold | scaffold2988.1 |
| Synonym | pfu_aug1.0_2935.1_30292 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2988.1_29001.t1 | 4 | 1 | Sushi | 248 | 289 | 5.5e-24 | 84.2 | 7.0e-10 | 2.6e-06 | 27.6 |
| pfu_aug2.0_2988.1_29001.t1 | 4 | 2 | Sushi | 294 | 343 | 5.5e-24 | 84.2 | 2.5e-06 | 0.0091 | 16.3 |
| pfu_aug2.0_2988.1_29001.t1 | 4 | 3 | Sushi | 352 | 406 | 5.5e-24 | 84.2 | 6.4e-10 | 2.4e-06 | 27.8 |
| pfu_aug2.0_2988.1_29001.t1 | 4 | 4 | Sushi | 411 | 460 | 5.5e-24 | 84.2 | 2.3e-10 | 8.7e-07 | 29.2 |
| pfu_aug2.0_2988.1_29001.t1 | 1 | 1 | MAM | 497 | 628 | 1.9e-20 | 73.2 | 8.6e-24 | 3.2e-20 | 72.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2988.1_29001.t1 | gi|676450563|ref|XP_009052419.1| | hypothetical protein LOTGIDRAFT_231724 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_2988.1_29001.t1 | gi|542169907|ref|XP_005466962.1| | PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like isoform X2 [Oreochromis niloticus] | 0.0 |
| pfu_aug2.0_2988.1_29001.t1 | gi|432852308|ref|XP_004067183.1| | PREDICTED: NEDD8-activating enzyme E1 regulatory subunit [Oryzias latipes] | 0.0 |
| pfu_aug2.0_2988.1_29001.t1 | gi|348516455|ref|XP_003445754.1| | PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like isoformX1 [Oreochromis niloticus] | 0.0 |
| pfu_aug2.0_2988.1_29001.t1 | gi|554854069|ref|XP_005937232.1| | PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Haplochromis burtoni] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2988.1_29001.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2988.1_29001.t1 gagtcctgtatatcagaagatgatgtcaagacattttgtaaacattcagcttttgtcagagttttaagatgtcgaaggct gcacgaagaatacaacccaaagacagcaaatactcaggagataggttcttgtgttgaggatgaagagaatgaccttgtgt tctatatattactccgagctgtagatcggttctatgaagaatacagccgctaccctggttggtatgatgatcaagtagag cctgatgttcacaaacttaagagtatcctaatgaagctattacaagaatggtccatacctcctacaataaaggatgatta tgtccatgaaatgtgtcggtatggagcggcagagttacacacagtgtcagcatttatagggggcgctgcagcacaggaag caatcaaagtgataaccggacaatttgtgcctatcaacaatacgtttatatacaatgccatgaaacaaacttacaggaaa gtattaaacttaattgccgtgaagatctcactagtcaaaagtgtgctgttccttcaggacaatgctcctattcacaagtc tgtctctgccatggctgccattcatgattgtagctttaatttgattgagcatcagccttattcacctgatcttgctccat cagactttcctcttttccaaaaactgaaagcagttatttcttgcatccactttcagtccgaatgctccacccctcaagta tcctattcacttttatcgactgggatcgatactgtaggaagctcaaaatcagtgacgtgtgacagtggctatgaacttga gaatggcatgacgtcacaagttattacgtgtcgatcgaatggaaattggaacgggacatctgtctgtaatctaccagaat gtgcagagccaacaacaccggctaatgccacaatactccccgggaacaacacagttggatcaacacgggtcgtggagtgt aacactggttttgctcagattggcggttcttccacaatagaatgcctggtcagtcaacaaacttggtcggtctggacagg atcttgtgaagtctgtggcgagccagagtcaattcaatatgctgttacatcagaaggggatcggacagtgggaagtataa ggacgtacacctgtatcacaggttatgaaggcaatggggaatcccctaacataacatgtgatgaatatgcccgatggaca tcatcgccgttttcttgcagccttgttgattgtggttctcccccaagcattgcaagtatgacatacacctccactggttc cacttggctttctactgccgagtactcctgtaactatgggtttgttgtcagcggaaatggaactatcgtctgctcttcat ccggagaatggtcatctactgtgatcaactgcaccgaaccttcgtcagccatttttgattttgagggtgatgacctgtac aacttagttggtgcgggcagtataagttataaatctttcaactcacaaaccggaggcacatcatcaacagatactggacc aacaggggcctaccacggtacaaagtacagatacttcgagggaaccggtccggaacaaaacgatgttgctcgaatggagt ccgacatctactttagtgcgggagtacaatgtatagatttcttctatagcatgtatggggaggacattggaacaatgaga atcaagtaccaagggtacggatcctcttcagagactctcctttggagtgactcgggtgacaagcaggagccaacatggtt caatgccaatgtaacagtcaatgccacagagaaattcaagctgattgttgaagcaactaaaggaggatccagttatgcat ctgatgcggctattgactacataagactgtttgactatgcatgctaa |
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Protein
| Protein ID | pfu_aug2.0_2988.1_29001.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2988.1_29001.t1 ESCISEDDVKTFCKHSAFVRVLRCRRLHEEYNPKTANTQEIGSCVEDEENDLVFYILLRAVDRFYEEYSRYPGWYDDQVE PDVHKLKSILMKLLQEWSIPPTIKDDYVHEMCRYGAAELHTVSAFIGGAAAQEAIKVITGQFVPINNTFIYNAMKQTYRK VLNLIAVKISLVKSVLFLQDNAPIHKSVSAMAAIHDCSFNLIEHQPYSPDLAPSDFPLFQKLKAVISCIHFQSECSTPQV SYSLLSTGIDTVGSSKSVTCDSGYELENGMTSQVITCRSNGNWNGTSVCNLPECAEPTTPANATILPGNNTVGSTRVVEC NTGFAQIGGSSTIECLVSQQTWSVWTGSCEVCGEPESIQYAVTSEGDRTVGSIRTYTCITGYEGNGESPNITCDEYARWT SSPFSCSLVDCGSPPSIASMTYTSTGSTWLSTAEYSCNYGFVVSGNGTIVCSSSGEWSSTVINCTEPSSAIFDFEGDDLY NLVGAGSISYKSFNSQTGGTSSTDTGPTGAYHGTKYRYFEGTGPEQNDVARMESDIYFSAGVQCIDFFYSMYGEDIGTMR IKYQGYGSSSETLLWSDSGDKQEPTWFNANVTVNATEKFKLIVEATKGGSSYASDAAIDYIRLFDYAC |
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