Gene
| Gene Model ID | pfu_aug2.0_2993.1_12341 |
|---|---|
| Locus | scaffold2993.1 : 1 ... 12514 : + |
| To GenomeBrowser | scaffold2993.1:1..12514 |
| Genes list of scaffold | scaffold2993.1 |
| Synonym | pfu_aug1.0_447.1_29267 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2993.1_12341.t1 | 3 | 1 | TCR | 59 | 97 | 1.9e-25 | 88.4 | 3.9e-17 | 5.7e-13 | 48.4 |
| pfu_aug2.0_2993.1_12341.t1 | 3 | 2 | TCR | 131 | 171 | 1.9e-25 | 88.4 | 2.3e-17 | 3.4e-13 | 49.2 |
| pfu_aug2.0_2993.1_12341.t1 | 3 | 3 | TCR | 234 | 236 | 1.9e-25 | 88.4 | 0.42 | 6200.0 | -2.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2993.1_12341.t1 | gi|524903801|ref|XP_005108093.1| | PREDICTED: protein lin-54 homolog [Aplysia californica] | 0.0 |
| pfu_aug2.0_2993.1_12341.t1 | gi|676445202|ref|XP_009050678.1| | hypothetical protein LOTGIDRAFT_142615 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_2993.1_12341.t1 | gi|585712388|ref|XP_006824909.1| | PREDICTED: protein lin-54 homolog [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_2993.1_12341.t1 | gi|260803175|ref|XP_002596466.1| | hypothetical protein BRAFLDRAFT_270843 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_2993.1_12341.t1 | gi|704169463|ref|XP_010131221.1| | PREDICTED: protein lin-54 homolog isoform X4 [Buceros rhinoceros silvestris] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2993.1_12341.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2993.1_12341.t1 ttgacccagcttcaaagtaaaccccagcagactatggtacaacaaccagtgcccattcagcaagcccctccccagcccat tcaggctcgacaagatttcatacccatcattagtaatgacacggctactagtgctaatcaaagtactgtgatagagccta caggagctaggccgaggaaaccttgtaactgtacaaaatccatgtgcttaaaattatattgtgactgttttgctaatggt gaattttgccataattgtaactgtaataattgtgccaataacttggaacatgaagaggaaagatctagggcgatcaaatc ttgtttagacagaaatcccatggcatttcacccaaagattggaaagggcaaagacggagaacgagacaggaagcataata aagggtgtaactgtaaaagatctggatgtcttaaaaactattgtgaatgctatgaggccaaaattatgtgctcggggtca tgtaaatgtgttggctgtaagaactttgaggaaagtccagaaaggaaaacattgatgcatctagctgatgctgcagaagt tcgtgtacagcaacagacagcagctaaatccaaattatcgtcacagatatccggtataccatccagacctcccctctcat cagccacaggagaaagacttccatacacctttatcacatctgaggtagcagaggcaacgtgtgcgtgtttactggcccag gctgaagaagcagagagattgaagatgccacctgttgtacaggagcgcatggttatagaggagtttggtagatgtttaat gcagatcattgactcagctaacagaacgaaagaatttactatagtggcagaatga |
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Protein
| Protein ID | pfu_aug2.0_2993.1_12341.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2993.1_12341.t1 LTQLQSKPQQTMVQQPVPIQQAPPQPIQARQDFIPIISNDTATSANQSTVIEPTGARPRKPCNCTKSMCLKLYCDCFANG EFCHNCNCNNCANNLEHEEERSRAIKSCLDRNPMAFHPKIGKGKDGERDRKHNKGCNCKRSGCLKNYCECYEAKIMCSGS CKCVGCKNFEESPERKTLMHLADAAEVRVQQQTAAKSKLSSQISGIPSRPPLSSATGERLPYTFITSEVAEATCACLLAQ AEEAERLKMPPVVQERMVIEEFGRCLMQIIDSANRTKEFTIVAE |
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