Gene
| Gene Model ID | pfu_aug2.0_2993.1_12342 |
|---|---|
| Locus | scaffold2993.1 : 15900 ... 45395 : - |
| To GenomeBrowser | scaffold2993.1:15900..45395 |
| Genes list of scaffold | scaffold2993.1 |
| Synonym | pfu_aug1.0_447.1_29268 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transient receptor potential cation channel subfamily m member 3-like | GO:0005216 GO:0006812 GO:0016020 GO:0034220 GO:0051716 GO:0065007 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2993.1_12342.t2 | 2 | 1 | Ion_trans | 261 | 282 | 3.0e-07 | 29.8 | 0.11 | 780.0 | -0.9 |
| pfu_aug2.0_2993.1_12342.t2 | 2 | 2 | Ion_trans | 320 | 525 | 3.0e-07 | 29.8 | 7.3e-11 | 5.4e-07 | 29.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2993.1_12342.t2 | gi|558210606|ref|XP_006107550.1| | PREDICTED: LOW QUALITY PROTEIN: transient receptor potential cation channel subfamily M member 1 [Myotis lucifugus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2993.1_12342.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2993.1_12342.t1 atgtatctcaggcaaacttgggcagcttacttatgttgtagacctgtagaacagatgggtaaccatccagatttactcaa tgacattggcaaggtcatcacacatctccttggtgacggttccctcaatccttattcaggtaaacattatgaagtggagg aacatttagaacctgtgtttggatacgtggagaagaaggaagaaggtccaacaatgaattataaacttgtgaagcgaaag agtagtaaaagtaagaaagggatgagaagaagtaaatctcggggtcgacaatttgattttgaacgtccagaaaaagagct tttccttctttgtgtgctgcttaatagaatggaaatggctaaggtgttttggagaatgggacaagatcatgtcggtgctg ctatatttgcgtgtagtttgatgaagggtatgtcgtcagtggcagatgatgaggaggaagtggaacttagtatagctctg tcacagaatgctgatttgtgcttttgtttcttgcagatcgtcatttccatcttttttccatttgtaattccatccatcaa atttaccatcaaaaagacgccaggtgatattatagaggaagctgatgacgccccagagtatgataaaatgcagctcagtg aagtagtacaacctaaagacaaacatatccatagtcccagggtataccccgaccctcctcagaatgctgaggaagaaacg ctcacgtctaaaacaaagataatcaaacacaaactgtataaagtcaattgtctgggagcttgctcaaaacaaaatgatgg aatcaatgtgataagtgctttctactatttctacacagctcctgttacagttttctggtgtaatgtgcttgcataccttg tgttcttgtcgtttttctcctactttgtgttgaccgatctttacccgctgccaaatcctcacgccccagctgacatagag atgttgacatggggatggactctcaccatggtgttagaggaaatcagacaggtgctttcaaaggatcagcaatcaataat gtacaagctgagaaactggtttgggagtgtatggaacagatttgacctgattatgtacaccctcttcctgacctctgtaa tactgaggtttgccctagacgagagtaacttcttatgggccagaatcttctacagcgttacgctagccatgtacttcctc agaatcatgcagtatttctacgtagagaaaaacatcggacctaaggtcatcatgatcagtagaatgataacagacttatt gtttttcttcatgatactggtggtgtttatactgagttttggtgtgatgtaccaggccaacttgttccctaactctgtac cagagtggaagattctcaaacaagttgtataccttccttactggcagatgtatggagaactcttcctggagaacatggag ggacaagcctcagatacatgcacaaataacgagacagcatggcgttattatggtgccgaaagatgtgcggagaaaaacgc cataggtcctctgttactggctggttacatgcttctcaccaacatcttactggtcaacctactgattgctatgttcagtg acacattccagaaagtacaagacaactcagagaaagtgtggaagtttcatcgattttccctggtgtacgagttttacgac cgtccgacccttatcccaccactgatagtcctcaaccacatcttccgtggaatcaggtggctcttacatagatgtacagg caaattcaagtacaacaatgtcttcaaacgtcgtttgagtcccaaagatgatgaaagattacgactgtttgagaaagacg cagtagaagaacatctacattcattgtttaaggaggaaaagaatagattagagaataaggtttccagcacatcagaaagg ttggagaaagtaatagaggagctagaccacatcaaagaacaagtccttgagagagaaggatcagcagagttatctcctat agtcagtactgctagatctatacctgtcacagaaaatcctactacagcaaggtctcaaatggacacatacagtatgaaac gggagatgacagatttagctgactttgtcaaagtacagatgcatgagatgacagaaatgatcaaataccttaactctcgt ctacccccacctcctactgacccccctggtgacgatggtcagccacgcccttctcccagggcaaagccaggtcctgcttt ggacatcacatatatgtcacagactgatgcttag |
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| Transcript ID | pfu_aug2.0_2993.1_12342.t2 |
| Definition | - |
>pfu_aug2.0_2993.1_12342.t2 atgtatctcaggcaaacttgggcagcttacttatgttgtagacctgtagaacagatgggtaaccatccagatttactcaa tgacattggcaaggtcatcacacatctccttggtgacggttccctcaatccttattcaggtaaacattatgaagtggagg aacatttagaacctgtgtttggatacgtggagaagaaggaagaaggtccaacaatgaattataaacttgaaagtaagaaa gggatgagaagaagtaaatctcggggtcgacaatttgattttgaacgtccagaaaaagagcttttccttctttgtgtgct gcttaatagaatggaaatggctaaggtgttttggagaatgggacaagatcatgtcggtgctgctatatttgcgtgtagtt tgatgaagggtatgtcgtcagtggcagatgatgaggaggaagtggaacttagtatagctctgtcacagaatgctgatttg tgcttttgtttcttgcagatcgtcatttccatcttttttccatttgtaattccatccatcaaatttaccatcaaaaagac gccaggtgatattatagaggaagctgatgacgccccagagtatgataaaatgcagctcagtgaagtagtacaacctaaag acaaacatatccatagtcccagggtataccccgaccctcctcagaatgctgaggaagaaacgctcacgtctaaaacaaag ataatcaaacacaaactgtataaagtcaattgtctgggagcttgctcaaaacaaaatgatggaatcaatgtgataagtgc tttctactatttctacacagctcctgttacagttttctggtgtaatgtgcttgcataccttgtgttcttgtcgtttttct cctactttgtgttgaccgatctttacccgctgccaaatcctcacgccccagctgacatagagatgttgacatggggatgg actctcaccatggtgttagaggaaatcagacaggtgctttcaaaggatcagcaatcaataatgtacaagctgagaaactg gtttgggagtgtatggaacagatttgacctgattatgtacaccctcttcctgacctctgtaatactgaggtttgccctag acgagagtaacttcttatgggccagaatcttctacagcgttacgctagccatgtacttcctcagaatcatgcagtatttc tacgtagagaaaaacatcggacctaaggtcatcatgatcagtagaatgataacagacttattgtttttcttcatgatact ggtggtgtttatactgagttttggtgtgatgtaccaggccaacttgttccctaactctgtaccagagtggaagattctca aacaagttgtataccttccttactggcagatgtatggagaactcttcctggagaacatggagggacaagcctcagataca tgcacaaataacgagacagcatggcgttattatggtgccgaaagatgtgcggagaaaaacgccataggtcctctgttact ggctggttacatgcttctcaccaacatcttactggtcaacctactgattgctatgttcagtgacacattccagaaagtac aagacaactcagagaaagtgtggaagtttcatcgattttccctggtgtacgagttttacgaccgtccgacccttatccca ccactgatagtcctcaaccacatcttccgtggaatcaggtggctcttacatagatgtacaggcaaattcaagtacaacaa tgtcttcaaacgtcgtttgagtcccaaagatgatgaaagattacgactgtttgagaaagacgcagtagaagaacatctac attcattgtttaaggaggaaaagaatagattagagaataaggtttccagcacatcagaaaggttggagaaagtaatagag gagctagaccacatcaaagaacaagtccttgagagagaaggatcagcagagttatctcctatagtcagtactgctagatc tatacctgtcacagaaaatcctactacagcaaggtctcaaatggacacatacagtatgaaacgggagatgacagatttag ctgactttgtcaaagtacagatgcatgagatgacagaaatgatcaaataccttaactctcgtctacccccacctcctact gacccccctggtgacgatggtcagccacgcccttctcccagggcaaagccagatattaggtcgtacaagtcagggagtgt acaattctactacgtatttactctaataacaacttatcagtag |
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Protein
| Protein ID | pfu_aug2.0_2993.1_12342.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2993.1_12342.t1 MYLRQTWAAYLCCRPVEQMGNHPDLLNDIGKVITHLLGDGSLNPYSGKHYEVEEHLEPVFGYVEKKEEGPTMNYKLVKRK SSKSKKGMRRSKSRGRQFDFERPEKELFLLCVLLNRMEMAKVFWRMGQDHVGAAIFACSLMKGMSSVADDEEEVELSIAL SQNADLCFCFLQIVISIFFPFVIPSIKFTIKKTPGDIIEEADDAPEYDKMQLSEVVQPKDKHIHSPRVYPDPPQNAEEET LTSKTKIIKHKLYKVNCLGACSKQNDGINVISAFYYFYTAPVTVFWCNVLAYLVFLSFFSYFVLTDLYPLPNPHAPADIE MLTWGWTLTMVLEEIRQVLSKDQQSIMYKLRNWFGSVWNRFDLIMYTLFLTSVILRFALDESNFLWARIFYSVTLAMYFL RIMQYFYVEKNIGPKVIMISRMITDLLFFFMILVVFILSFGVMYQANLFPNSVPEWKILKQVVYLPYWQMYGELFLENME GQASDTCTNNETAWRYYGAERCAEKNAIGPLLLAGYMLLTNILLVNLLIAMFSDTFQKVQDNSEKVWKFHRFSLVYEFYD RPTLIPPLIVLNHIFRGIRWLLHRCTGKFKYNNVFKRRLSPKDDERLRLFEKDAVEEHLHSLFKEEKNRLENKVSSTSER LEKVIEELDHIKEQVLEREGSAELSPIVSTARSIPVTENPTTARSQMDTYSMKREMTDLADFVKVQMHEMTEMIKYLNSR LPPPPTDPPGDDGQPRPSPRAKPGPALDITYMSQTDA |
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| Protein ID | pfu_aug2.0_2993.1_12342.t2 |
| Definition | - |
>pfu_aug2.0_2993.1_12342.t2 MYLRQTWAAYLCCRPVEQMGNHPDLLNDIGKVITHLLGDGSLNPYSGKHYEVEEHLEPVFGYVEKKEEGPTMNYKLESKK GMRRSKSRGRQFDFERPEKELFLLCVLLNRMEMAKVFWRMGQDHVGAAIFACSLMKGMSSVADDEEEVELSIALSQNADL CFCFLQIVISIFFPFVIPSIKFTIKKTPGDIIEEADDAPEYDKMQLSEVVQPKDKHIHSPRVYPDPPQNAEEETLTSKTK IIKHKLYKVNCLGACSKQNDGINVISAFYYFYTAPVTVFWCNVLAYLVFLSFFSYFVLTDLYPLPNPHAPADIEMLTWGW TLTMVLEEIRQVLSKDQQSIMYKLRNWFGSVWNRFDLIMYTLFLTSVILRFALDESNFLWARIFYSVTLAMYFLRIMQYF YVEKNIGPKVIMISRMITDLLFFFMILVVFILSFGVMYQANLFPNSVPEWKILKQVVYLPYWQMYGELFLENMEGQASDT CTNNETAWRYYGAERCAEKNAIGPLLLAGYMLLTNILLVNLLIAMFSDTFQKVQDNSEKVWKFHRFSLVYEFYDRPTLIP PLIVLNHIFRGIRWLLHRCTGKFKYNNVFKRRLSPKDDERLRLFEKDAVEEHLHSLFKEEKNRLENKVSSTSERLEKVIE ELDHIKEQVLEREGSAELSPIVSTARSIPVTENPTTARSQMDTYSMKREMTDLADFVKVQMHEMTEMIKYLNSRLPPPPT DPPGDDGQPRPSPRAKPDIRSYKSGSVQFYYVFTLITTYQ |
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