Gene
| Gene Model ID | pfu_aug2.0_3.1_10020 |
|---|---|
| Locus | scaffold3.1 : 276 ... 3092 : + |
| To GenomeBrowser | scaffold3.1:276..3092 |
| Genes list of scaffold | scaffold3.1 |
| Synonym | pfu_aug1.0_3002.1_59102 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3.1_10020.t1 | 1 | 1 | Ribosomal_L37 | 49 | 123 | 6.6e-14 | 51.2 | 7.2e-18 | 1.1e-13 | 50.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3.1_10020.t1 | gi|572266732|ref|XP_006611459.1| | PREDICTED: 39S ribosomal protein L54, mitochondrial-like [Apis dorsata] | 3.0e-22 |
| pfu_aug2.0_3.1_10020.t1 | gi|110756575|ref|XP_001122212.1| | PREDICTED: 39S ribosomal protein L54, mitochondrial [Apis mellifera] | 2.0e-20 |
| pfu_aug2.0_3.1_10020.t1 | gi|350409513|ref|XP_003488763.1| | PREDICTED: 39S ribosomal protein L54, mitochondrial [Bombus impatiens] | 3.0e-20 |
| pfu_aug2.0_3.1_10020.t1 | gi|380025432|ref|XP_003696478.1| | PREDICTED: 39S ribosomal protein L54, mitochondrial [Apis florea] | 8.0e-20 |
| pfu_aug2.0_3.1_10020.t1 | gi|340713760|ref|XP_003395404.1| | PREDICTED: 39S ribosomal protein L54, mitochondrial [Bombus terrestris] | 3.0e-19 |
Transcript
| Transcript ID | pfu_aug2.0_3.1_10020.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3.1_10020.t1 atgtcatcggttctgttactgcccagcgtcctgagggcagtgcacacagggaagggcacagtaggatgtatgtaccagtg tgtggcagggtatgctgccaaaaagacaggccctgttctgaaaaagaaaaagaagttctttgacacagaaacagatcctg aaaaactttgtaacaatctatgtggaggaaatatttacaaggaaggggaggatccaaaactgggtccagattctgtgtat cctcattggatatgggatcttagaacggagaaaaaacaagtgccgataaaagatttgtctccagacacatgggaatactg gagaagtgtgaagaaaatagcccgaaagaggaagaacttttacatgaaaaagtacaaagtatag |
|
Protein
| Protein ID | pfu_aug2.0_3.1_10020.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3.1_10020.t1 MSSVLLLPSVLRAVHTGKGTVGCMYQCVAGYAAKKTGPVLKKKKKFFDTETDPEKLCNNLCGGNIYKEGEDPKLGPDSVY PHWIWDLRTEKKQVPIKDLSPDTWEYWRSVKKIARKRKNFYMKKYKV |
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