Gene
| Gene Model ID | pfu_aug2.0_3.1_10024 |
|---|---|
| Locus | scaffold3.1 : 114476 ... 120445 : + |
| To GenomeBrowser | scaffold3.1:114476..120445 |
| Genes list of scaffold | scaffold3.1 |
| Synonym | pfu_aug1.0_13468.1_18005 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dtdp-glucose 4-6- | GO:0006486 GO:0008417 GO:0016021 GO:0016853 GO:0032580 GO:0036065 GO:0050662 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3.1_10024.t1 | 1 | 1 | Epimerase | 11 | 237 | 1.0e-38 | 133.0 | 8.2004e-42 | 1.4e-38 | 132.7 |
| pfu_aug2.0_3.1_10024.t1 | 1 | 1 | RmlD_sub_bind | 11 | 175 | 9.6e-19 | 67.3 | 6.7e-22 | 1.1e-18 | 67.1 |
| pfu_aug2.0_3.1_10024.t1 | 1 | 1 | Polysacc_synt_2 | 11 | 160 | 3.3e-13 | 49.1 | 7.2e-16 | 1.2e-12 | 47.3 |
| pfu_aug2.0_3.1_10024.t1 | 1 | 1 | NAD_binding_10 | 11 | 162 | 2.3e-06 | 27.7 | 2.4e-09 | 4.0e-06 | 26.9 |
| pfu_aug2.0_3.1_10024.t1 | 1 | 1 | 3Beta_HSD | 12 | 177 | 6.9e-21 | 74.1 | 5.8e-24 | 9.6e-21 | 73.7 |
| pfu_aug2.0_3.1_10024.t1 | 1 | 1 | NAD_binding_4 | 13 | 163 | 5.8e-12 | 45.0 | 6.0e-13 | 9.9e-10 | 37.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3.1_10024.t1 | gi|676468822|ref|XP_009058332.1| | hypothetical protein LOTGIDRAFT_122411 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_3.1_10024.t1 | gi|524868985|ref|XP_005091290.1| | PREDICTED: UDP-glucuronate 4-epimerase 1-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_3.1_10024.t1 | gi|291230305|ref|XP_002735108.1| | PREDICTED: putative UDP-arabinose 4-epimerase 4-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_3.1_10024.t1 | gi|72180965|ref|XP_784659.1| | PREDICTED: UDP-glucuronic acid decarboxylase 1-like isoform X2 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_3.1_10024.t1 | gi|390354266|ref|XP_003728292.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3.1_10024.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3.1_10024.t1 atgcaatgcgctacaagcagtaaaggtcacgtgatggtgacaggaggggcgggataccttggatccaccctagtcccgat cctattggaggacggatatgaggtcacagtgtttgaaaaattttcctggggagtttcgtctttgctacctgtcgcccaac acccaaaactaaacattgtgatgggtgatatccgagtcaagaaagagcttgaagaaattatcgcggacaaggacgccatt attcatttggcggccattgttggttatcccgcgtgcgataaggacccggatcaggctatcgatgtaaacgtcatcgggac ccggaatatcgtcgagctaaaacgcccggatcaagcactgatatatgcaagtaccggatcttgctacggagcagttgacg gcatttgtacggaagaaacccagatcagtcctcttactttatacggaagtagcaaagcggatgctgagaagatggtctta aaggccggtggtatcggactccgtttggccacggttttcggactatcgcctcggttacgactggatctcctgatcaatga ccttacatacaaagccctcacaatgaaagaattcgatctgtacgaaggatccttccgccgtaccttcctccatgtgaaag acgccgcaagagcattcgctttcgctttgaataattacggcataatgaaaggacaagcttataatgtgggtgacgaggct atgaacatgacaaagtcaagggttgcacagctaattcaacaaaacgtcaaaggctgcgtcatcacggaatctaaatctgg ggaagacaaagataagagagattacgaagtttcgtacgccaaaatacgaaacctcggcttcacatcaaccatcacagtag aacaaggcataaaagacatgttgaaagttttaccgttcatggacaaaggagatctgtcaaaatgcaaaaatgtgtga |
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Protein
| Protein ID | pfu_aug2.0_3.1_10024.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3.1_10024.t1 MQCATSSKGHVMVTGGAGYLGSTLVPILLEDGYEVTVFEKFSWGVSSLLPVAQHPKLNIVMGDIRVKKELEEIIADKDAI IHLAAIVGYPACDKDPDQAIDVNVIGTRNIVELKRPDQALIYASTGSCYGAVDGICTEETQISPLTLYGSSKADAEKMVL KAGGIGLRLATVFGLSPRLRLDLLINDLTYKALTMKEFDLYEGSFRRTFLHVKDAARAFAFALNNYGIMKGQAYNVGDEA MNMTKSRVAQLIQQNVKGCVITESKSGEDKDKRDYEVSYAKIRNLGFTSTITVEQGIKDMLKVLPFMDKGDLSKCKNV |
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