Gene
| Gene Model ID | pfu_aug2.0_3.1_10031 |
|---|---|
| Locus | scaffold3.1 : 244334 ... 273479 : - |
| To GenomeBrowser | scaffold3.1:244334..273479 |
| Genes list of scaffold | scaffold3.1 |
| Synonym | pfu_aug1.0_8293.1_09731 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3.1_10031.t2 | 3 | 1 | DLIC | 19 | 145 | 0.0 | 414.3 | 0.0 | 0.0 | 177.1 |
| pfu_aug2.0_3.1_10031.t2 | 3 | 2 | DLIC | 166 | 307 | 0.0 | 414.3 | 0.0 | 0.0 | 192.3 |
| pfu_aug2.0_3.1_10031.t2 | 3 | 3 | DLIC | 327 | 417 | 0.0 | 414.3 | 1.8e-15 | 4.5e-12 | 45.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3.1_10031.t2 | gi|557004332|ref|XP_006004092.1| | PREDICTED: cytoplasmic dynein 1 light intermediate chain 2 isoform X1 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_3.1_10031.t2 | gi|557004335|ref|XP_006004093.1| | PREDICTED: cytoplasmic dynein 1 light intermediate chain 2 isoform X2 [Latimeria chalumnae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3.1_10031.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3.1_10031.t1 atgttaaacattggtggtgtcgctgaagtacagatagaggtgagcttatgctatacccctgatgtctatgtttgtgataa tgaaagtggaaaaaccacattagttgctaagcttcaaggtgtagaggagccgaagaaagggtctggcttagagtattact atatagatgtcacagatgaatatagagatgaacaagacagagtaggggtctgggttttagatggagacacaagccataat ggacttctacgattttgtatatcggaggaaaactttgcacatagtctagtcttattagtgggatccatggcacacccatg gtccatcatggagtcccttcagaggtggtcagcatgcctacaggatcatataagtagactcaaaattcctccagaggaaa tgagagaatatgaagaaagtaataattccaattacgaaactgctacagaagggttacatgaaaatggtgaacattgggat catttcagctcgctcacctcagcttcaatggttagattcttccaagaatacacagagcccgacgagagccatacagcgtc atccgcacattcacggcgtgacgtaaatcctttacatccctctgctagccatacagaaggagataaagttttactacctt taggagaaaatactttaacgcaaaatttagggattccaattatagtagttttaacaaagtgtgatgcaatctcaacatta gaaaaagagcatgattataaagaagaacattttgacttcatacagcaacatgttagaaagttctgtttgcaatatggtgc tgcattagtgtattcctctgttaaggaagagaaaaactgtgatttattatatagatatttagtacacagaatatttggtt tccccttctcctcacaagcatatgttgttgaaagagacctcgtatttgtagcattcatttgtattatccagaagtacatg tacatgaaggattataacatttgtctagaatctccacagagaatgtccggtgtaagtcctaagtcatcatcctctccgag acaaaccacgaccagtacccccgtcaccagctcaccaaagaagagactgatggatggtaaagctccggctaatgctagtg aagggatgctggctaatttcttcaatagtttactgaacaaacagaatcctcgagcccccggtacggcaccaaccaaagca gacaaagctgctgtttcaagggacgctgcagaacaacttgaacgtttaaaaaaatctacgaaaactgtgtcagaaccaaa acctaatggcccagactcagcatcgtga |
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| Transcript ID | pfu_aug2.0_3.1_10031.t2 |
| Definition | - |
>pfu_aug2.0_3.1_10031.t2 atgcgcacagaggtgaaaccaggcctagaggggaggaggactggattttcaaattctttcacaggtgataatgaaagtgg aaaaaccacattagttgctaagcttcaaggtgtagaggagccgaagaaagggtctggcttagagtattactatatagatg tcacagatgaatatagagatgaacaagacagagtaggggtctgggttttagatggagacacaagccataatggacttcta cgattttgtatatcggaggaaaactttgcacatagtctagtcttattagtgggatccatggcacacccatggtccatcat ggagtcccttcagaggtggtcagcatgcctacaggatcatataagtagactcaaaattcctccagaggaaatgagagaat atgaagaaagtaataattccaattacgaaactgctacagaagggttacatgaaaatggtgaacattgggatcatttcagc tcgctcacctcagcttcaatggttagattcttccaagaatacacagagcccgacgagagccatacagcgtcatccgcaca ttcacggcgtgacgtaaatcctttacatccctctgctagccatacagaaggagataaagttttactacctttaggagaaa atactttaacgcaaaatttagggattccaattatagtagttttaacaaagtgtgatgcaatctcaacattagaaaaagag catgattataaagaagaacattttgacttcatacagcaacatgttagaaagttctgtttgcaatatggtgctgcattagt gtattcctctgttaaggaagagaaaaactgtgatttattatatagatatttagtacacagaatatttggtttccccttct cctcacaagcatatgttgttgaaagagacctcgtatttgtagcattcatttgtattatccagaagtacatgtacatgaag gattataacatttgtctagaatctccacagagaatgtccggtgtaagtcctaagtcatcatcctctccgagacaaaccac gaccagtacccccgtcaccagctcaccaaagaagatggatggtaaagctccggctaatgctagtgaagggatgctggcta atttcttcaatagtttactgaacaaacagaatcctcgagcccccggtacggcaccaaccaaagcagacaaagctgctgtt tcaagggacgctgcagaacaacttgaacgtttaaaaaaatctacgaaaactgtgtcagaaccaaaacctaatggcccaga ctcagcatcgtga |
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Protein
| Protein ID | pfu_aug2.0_3.1_10031.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3.1_10031.t1 MLNIGGVAEVQIEVSLCYTPDVYVCDNESGKTTLVAKLQGVEEPKKGSGLEYYYIDVTDEYRDEQDRVGVWVLDGDTSHN GLLRFCISEENFAHSLVLLVGSMAHPWSIMESLQRWSACLQDHISRLKIPPEEMREYEESNNSNYETATEGLHENGEHWD HFSSLTSASMVRFFQEYTEPDESHTASSAHSRRDVNPLHPSASHTEGDKVLLPLGENTLTQNLGIPIIVVLTKCDAISTL EKEHDYKEEHFDFIQQHVRKFCLQYGAALVYSSVKEEKNCDLLYRYLVHRIFGFPFSSQAYVVERDLVFVAFICIIQKYM YMKDYNICLESPQRMSGVSPKSSSSPRQTTTSTPVTSSPKKRLMDGKAPANASEGMLANFFNSLLNKQNPRAPGTAPTKA DKAAVSRDAAEQLERLKKSTKTVSEPKPNGPDSAS |
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| Protein ID | pfu_aug2.0_3.1_10031.t2 |
| Definition | - |
>pfu_aug2.0_3.1_10031.t2 MRTEVKPGLEGRRTGFSNSFTGDNESGKTTLVAKLQGVEEPKKGSGLEYYYIDVTDEYRDEQDRVGVWVLDGDTSHNGLL RFCISEENFAHSLVLLVGSMAHPWSIMESLQRWSACLQDHISRLKIPPEEMREYEESNNSNYETATEGLHENGEHWDHFS SLTSASMVRFFQEYTEPDESHTASSAHSRRDVNPLHPSASHTEGDKVLLPLGENTLTQNLGIPIIVVLTKCDAISTLEKE HDYKEEHFDFIQQHVRKFCLQYGAALVYSSVKEEKNCDLLYRYLVHRIFGFPFSSQAYVVERDLVFVAFICIIQKYMYMK DYNICLESPQRMSGVSPKSSSSPRQTTTSTPVTSSPKKMDGKAPANASEGMLANFFNSLLNKQNPRAPGTAPTKADKAAV SRDAAEQLERLKKSTKTVSEPKPNGPDSAS |
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