Gene
| Gene Model ID | pfu_aug2.0_3.1_10033 |
|---|---|
| Locus | scaffold3.1 : 286145 ... 328689 : - |
| To GenomeBrowser | scaffold3.1:286145..328689 |
| Genes list of scaffold | scaffold3.1 |
| Synonym | pfu_aug1.0_2945.1_37450 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3.1_10033.t1 | 3 | 1 | RTTN_N | 12 | 109 | 5.6e-31 | 107.0 | 1.4e-33 | 4.0e-30 | 104.2 |
| pfu_aug2.0_3.1_10033.t1 | 3 | 2 | RTTN_N | 1444 | 1489 | 5.6e-31 | 107.0 | 0.4 | 1200.0 | 0.1 |
| pfu_aug2.0_3.1_10033.t1 | 3 | 3 | RTTN_N | 1895 | 1935 | 5.6e-31 | 107.0 | 2.6 | 7700.0 | -2.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3.1_10033.t1 | gi|514712727|ref|XP_005011903.1| | PREDICTED: rotatin [Anas platyrhynchos] | 0.0 |
| pfu_aug2.0_3.1_10033.t1 | gi|374858062|ref|NP_001243472.1| | rotatin [Gallus gallus] | 0.0 |
| pfu_aug2.0_3.1_10033.t1 | gi|699683415|ref|XP_009887377.1| | PREDICTED: rotatin [Charadrius vociferus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3.1_10033.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3.1_10033.t1 atgcaagatgcaaagagaaaaagtcatagccttgaggagatccgtgtacgagcgttagagaacttactgtcaaaactaga gcataaactgatttgtgacgctgatattgtgaatgaacgtcatttgttgatccgactgctggaatggtttaattacaagg aacctcccaagcagggagatgttcttcacctgctactcaagttgtcacagcatacagcttcagcagagatcctgcaggat attggggctgtagaattcctccccaagctacgagcagatgtgtccagctcccttcagcctgtcattgatcagattctaga aaacatattccgtcttccagaaactaaggtggatgatcatgtaccggcttgtatctacacaaaacatggtcaaaatccag tgtttgtccctgaagatacacagcatgttgtccccactgacagacaaagccacatttccgagggtcaaggtcagtctctt atcgtgagtggacgagacggaacagatggttactttacacgagaagccgtagagtctgtacaacaacaacaagtagaaaa ctggacaggtacaagtagtggattgaaggtgaccacgtttccttggttagctctgacgccaacagatagacatgtgcttc tctccacaaatacatcacttcagtgtagagagagtcatctactatgcagctcatgtgaatttctctgtgatgtcgtcttt caagatttcccagcagagatcttcttacaaaggcctaatattgtcaagaatttacttggtatactcggaagtcccagtca ttcaagcacacagctgattattcacgcagcaagaacattggggaatttagccgcgttattgaggaatcgactgagatatt atcaagacccggcactgttcacaccaaaacaagattttaattctgtgccgtcctccccctttgccacgtcccccagcacg ctgtctgaacaatctgacggatcgcagtcaatgagccgtagctccttcacgggatgggctgacactcgtcaccgtggtga cggcagggacaacgatactacttcctccagcagtacgtctagggcgtccagtgtgggtctagctcctgaattagccaacc cagaggagacagatttagaagacatgcagaccttacagtgtatacaaataaccctaccccactttgttaccatggtgatg gataaggccctgccattattgaggacaggtgaagagggcgtggtcgtacagttgatgtacctccttaatcaagtgtttga cctgttagtgaccacagtcagtccacaggtgtggggagagacttcatcgcaagccagggaaatcgttgagcgtattatca aaagcctggaagaaatgtctgatctgatccactatcatcaccatggagatggtagtcatggtaacagtaaccatgagaag gacagaggtgaccttgtacaacacaggttgacctacaccggggtggctgggtacatggccaggctacttaaacatttagt accagtacagatggcaaaaacgttactgccgttaaacctgatgaaggcaatacaacttcttgtctatgatgagggactgt ctcaaagttatccagaggtacagatcacactcctggcttacctacaacaaataagtccagagaagtaccgagtgtttgtg gaaacagccaaagttgctcagtctatggaaaagacctgtaaattcctaatgctttgtcaagaagaggcatataaaggtag cagtgagttgataacgatggcagacggagcactccatagtctaccgtatcatctacatctccccctggtgtcagaattcg tcaaactttcttcatctgtatgtgctagaactacagagcaggctgatttacaatccaaatgtactgatgtattactgaag ttcctttcccatcccatattgaatgtacgacagcaggcttacagcacggcaatacaagtgttaaagggctcactgagtat agaggaagcttcagaccccagctccagagcctgttacttgtcaaggttcctcttccatccagatgtcctctatcagattg ttgtctttggattagcagaccaagaccctgtggtgtctaaattagctacagatgtactctgccacatactggatagtcag ttactgatgtcagaggaattgtgggctgaacttatggcaaatctactcaaatccctaccaatccttcagactgatggtct aaggaaggtttatgacatatttaagtcgagcagtgtggatatcggagttaagaaatccgctgtggatcagctggccatca tactagaggatcacaatctccacgcggcattcaaagcggagaatggcttggatactgtacttaatcatataaaggcgggg cttgtcaaacaagaggactcagtgaatgagaacatatcgtacctaccagcctgtacatcgattgttcgtcagctcgttca ccatgactactcgctacgtcataaactggcacaagacacggagatatacatgaacttactgagagtggcaaagtttgatc ttggaggaggaacaaaaccaatcatccatttctcagtgcctcagatactgaagaaaagatgtaggttaccatttcgtccc gcctgtcatcatgagacgagtcctcaccaggtggcgctacctaatgaccctgacccgttattgtccagcccgtcatgtga catgttaaaggtcagctggaacatagcgtggcatggaggaatggagggactgctgaaatatctgtcacggaaaaaagatt cacaagattccaatacagagttttccgctaagctacatctcagctgcattgataagaagattcttcaaggtggtcatttg aaggaaggaataaaacaagccgtatacggtatatctaacgctacgtcacacagagccgtgagctctgccttactacgact cctgaactatctcgtcacatcgtttggatacggaggaccggaaatcatgtttggattagactggttcacaagtgtaggaa ggttttccgctaagctacatctcagctgcattgataagaagattctgcaaggtggtcatttgaaggaaggaataaaacaa gccgtttacggtatatctaacgccacgtcgcacaaagccgtgagctctgccttactacgactcctgaattatctggtcac atcgtttggatacgggggaccggaaatcatgtttggattagactggttcacaagtgtaggaagatttatgaaagtacaac cctcccttcctgacgatgagtcattactacaagaagtccttcattttataagtatggctttaaaactgaccaatcaggtg tcagaaaacacattacagtggttaggagaaatgctgtatcaaccatcaggacctctgattggcttatcacatagatcgtc tgtacagggagaaaccagagatgttcctgaaaatgtcaatataaaaagaactttggataaagagttattgtccttcatat ccacatataacagtaaactgccatacttactgtgtagaaagttgaagattcagcagctacgtggtgatttggctcaccag ttgttacagagattaaatgttacagacgctccacacttttacaatctggcctccctggagggtacattacagtgtcttat gcacattactgcaagacctaaatggagtcaagagagcacagagttagagagcagcacattgtgctccagggtactgtcat ccctgcttgaggtggtgtctgcctttcatataggtcgtggtggtacgtctatgtcgtacatgggtaaaggtgtaacaaaa gctgctactctatgtctacgtcacctagcatacgaaatgtcgactctgtctgatgacaaggattggcccaagcagtggtc atacgtacaacaaaataaatcggtacagacctctgtggagggggaggaggaggaagagaatggacttaattggatgctga cattgtgggcatatagagacccagaggtgcgtacggcaggtttaggtattgctgtagccctcacatctacagaggttggt cgtatcttagtggcatcacagtgtaaacatatacctggaggtatctggggtgcggcattcagtattctcctggaccaatc agaatgcagtatggtcagacaacaggcagctttattactagttaatttaacctctcagaccatgccatgtggcagtgtgg agctagaacataacgtatggcaaggccctattgtcactgatacagacttcgaggtatcgctggtgggtcttacagcgctt ttagcgttactacaccatagtcagttctaccaggaaatgctggtggtccttacaaacttctatgcccagcctaccataca aacggcagccgttatggaccttgtcaattataatgtgtcgacatctagctcagagacaactctatcaactacagctgatt taacatcggtcagtcagcaacatttatccaatgcttcatcaggacagctcggcagcttacagagttaccctcacggcgtt cctaaagctacgcaaagtggaaatcccgagcctcgggaggagggtgacgtctcagggaacttcctaagtgtggccacacc ctccctggtatcgtctatatgtcagctgatcaggaacctagtgatccttgcaccacaagatacatttacctgcttaaaga aagactcattcattaaagtttttacacaaatgttggacaccaacttgatagaggcatatataacggagatgcaaggatcc cacagcacagatcagtacgacgttgttttctgtgatctattagatatgtatggcagtatattgtcgttacttaaagcctg tatactgtacgacacacctacacgacaggacgtccttgccgatcggaacttcctgatctcagggtttgccctcctgacta tcaatattaaaggctctacagacatgatgagtaagctacaggacttatggagaaatgtgtttgagtttttcaccctggca ttacagagtcaaggagcactggccttagatgttatcactgatgctgtacagaaactatggcctacattaagtggtatgat ggaaacactattggagataagactggattaccacaatgatctatttatagcctgtcaacagttcctgtctatattgtttg gggaggagggtaggctgcacggacggcagccagaattgtcaacacaaactctgaccataacacaaatgttagatgaatca tatgaaaaagagaacaaggacgttgccatggtaacatctggaagcagactttgtaaggctctgattggtgtatatgatca tgtgttaataaagtctaacgacctcagaaatcctgatagactccatgctatagcctctctcaggaacctactggccatca gtgaatcagcgaaagattatgccataaaaactggtcttgttgagactgtgatagaacatgtgaagactactcacactaag ttaaacctcgaggtgctacaacttggtaaaagtaccgccaagaaaaaggagaaagaagagccacttatccttgaccttca actgacctttgacctcctgagaaatctattatatggcaacgaaagtgcaaagatggcatgttattactctggtcttccga gcttggtgcaccgtttatggtcctggtgccagatggagccacctctcatgatgtccgccctatcactactctccacatac actgcaaaatgtcccacagctgccagttcattggcctatactacagcccatgtgacagcaaccagccaatcaggagccaa ggttgcccagcagctgagtaacaactccttggtacattgtatgataaaactggcaggaagggacggccataaggacggaa tgctgagggccgtgtactcggtgttagccacactgactttgtcatcagagtgcaggaatgttatatataaaagtaatttt ctgagagatttcctggatttgaaccccagaaaaacaaagaagagtaagagagtactattaatggaacagctatggacgga actgctcgtcaatttgtcattttctctggagggacaacaaatgatactcaaaacaggagactcactagaactactattgg actttgtggagtgctgccagggacatacattagaatgctctctactcatcatcagaaatatgtgttgccatggcagctgt aaaccaaagttactctctaatgataaactattacctcagattttacaatgcttagagagtaaatccgagaaagtccagac aatagccgcttcagcattgtgggctcttgtattcaataatcagaaggccaaagtagctatgaagaatgccaacttagtac ccaaactacaggatttgttaggtcggataaacgagggaaaatgtacgcaagagaaatatatacaggacttgaataatgtg atcataacggttacagagtaa |
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Protein
| Protein ID | pfu_aug2.0_3.1_10033.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3.1_10033.t1 MQDAKRKSHSLEEIRVRALENLLSKLEHKLICDADIVNERHLLIRLLEWFNYKEPPKQGDVLHLLLKLSQHTASAEILQD IGAVEFLPKLRADVSSSLQPVIDQILENIFRLPETKVDDHVPACIYTKHGQNPVFVPEDTQHVVPTDRQSHISEGQGQSL IVSGRDGTDGYFTREAVESVQQQQVENWTGTSSGLKVTTFPWLALTPTDRHVLLSTNTSLQCRESHLLCSSCEFLCDVVF QDFPAEIFLQRPNIVKNLLGILGSPSHSSTQLIIHAARTLGNLAALLRNRLRYYQDPALFTPKQDFNSVPSSPFATSPST LSEQSDGSQSMSRSSFTGWADTRHRGDGRDNDTTSSSSTSRASSVGLAPELANPEETDLEDMQTLQCIQITLPHFVTMVM DKALPLLRTGEEGVVVQLMYLLNQVFDLLVTTVSPQVWGETSSQAREIVERIIKSLEEMSDLIHYHHHGDGSHGNSNHEK DRGDLVQHRLTYTGVAGYMARLLKHLVPVQMAKTLLPLNLMKAIQLLVYDEGLSQSYPEVQITLLAYLQQISPEKYRVFV ETAKVAQSMEKTCKFLMLCQEEAYKGSSELITMADGALHSLPYHLHLPLVSEFVKLSSSVCARTTEQADLQSKCTDVLLK FLSHPILNVRQQAYSTAIQVLKGSLSIEEASDPSSRACYLSRFLFHPDVLYQIVVFGLADQDPVVSKLATDVLCHILDSQ LLMSEELWAELMANLLKSLPILQTDGLRKVYDIFKSSSVDIGVKKSAVDQLAIILEDHNLHAAFKAENGLDTVLNHIKAG LVKQEDSVNENISYLPACTSIVRQLVHHDYSLRHKLAQDTEIYMNLLRVAKFDLGGGTKPIIHFSVPQILKKRCRLPFRP ACHHETSPHQVALPNDPDPLLSSPSCDMLKVSWNIAWHGGMEGLLKYLSRKKDSQDSNTEFSAKLHLSCIDKKILQGGHL KEGIKQAVYGISNATSHRAVSSALLRLLNYLVTSFGYGGPEIMFGLDWFTSVGRFSAKLHLSCIDKKILQGGHLKEGIKQ AVYGISNATSHKAVSSALLRLLNYLVTSFGYGGPEIMFGLDWFTSVGRFMKVQPSLPDDESLLQEVLHFISMALKLTNQV SENTLQWLGEMLYQPSGPLIGLSHRSSVQGETRDVPENVNIKRTLDKELLSFISTYNSKLPYLLCRKLKIQQLRGDLAHQ LLQRLNVTDAPHFYNLASLEGTLQCLMHITARPKWSQESTELESSTLCSRVLSSLLEVVSAFHIGRGGTSMSYMGKGVTK AATLCLRHLAYEMSTLSDDKDWPKQWSYVQQNKSVQTSVEGEEEEENGLNWMLTLWAYRDPEVRTAGLGIAVALTSTEVG RILVASQCKHIPGGIWGAAFSILLDQSECSMVRQQAALLLVNLTSQTMPCGSVELEHNVWQGPIVTDTDFEVSLVGLTAL LALLHHSQFYQEMLVVLTNFYAQPTIQTAAVMDLVNYNVSTSSSETTLSTTADLTSVSQQHLSNASSGQLGSLQSYPHGV PKATQSGNPEPREEGDVSGNFLSVATPSLVSSICQLIRNLVILAPQDTFTCLKKDSFIKVFTQMLDTNLIEAYITEMQGS HSTDQYDVVFCDLLDMYGSILSLLKACILYDTPTRQDVLADRNFLISGFALLTINIKGSTDMMSKLQDLWRNVFEFFTLA LQSQGALALDVITDAVQKLWPTLSGMMETLLEIRLDYHNDLFIACQQFLSILFGEEGRLHGRQPELSTQTLTITQMLDES YEKENKDVAMVTSGSRLCKALIGVYDHVLIKSNDLRNPDRLHAIASLRNLLAISESAKDYAIKTGLVETVIEHVKTTHTK LNLEVLQLGKSTAKKKEKEEPLILDLQLTFDLLRNLLYGNESAKMACYYSGLPSLVHRLWSWCQMEPPLMMSALSLLSTY TAKCPTAASSLAYTTAHVTATSQSGAKVAQQLSNNSLVHCMIKLAGRDGHKDGMLRAVYSVLATLTLSSECRNVIYKSNF LRDFLDLNPRKTKKSKRVLLMEQLWTELLVNLSFSLEGQQMILKTGDSLELLLDFVECCQGHTLECSLLIIRNMCCHGSC KPKLLSNDKLLPQILQCLESKSEKVQTIAASALWALVFNNQKAKVAMKNANLVPKLQDLLGRINEGKCTQEKYIQDLNNV IITVTE |
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