Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_3.1_10039
Locus scaffold3.1 : 537840 ... 545823 : +
To GenomeBrowser scaffold3.1:537840..545823
Genes list of scaffold scaffold3.1
Synonym pfu_aug1.0_2803.1_30255

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_3.1_10039.t1 9 1 C1_1 132 171 8.8e-06 25.3 0.00013 0.17 11.6
pfu_aug2.0_3.1_10039.t1 15 1 zf-H2C2_2 134 148 0.0 170.6 5.3e-05 0.072 13.4
pfu_aug2.0_3.1_10039.t1 14 1 zf-C2H2_6 136 147 8.1e-23 79.5 0.0013 1.7 8.6
pfu_aug2.0_3.1_10039.t1 14 1 zf-C2H2 137 159 0.0 180.8 3.5e-05 0.047 14.0
pfu_aug2.0_3.1_10039.t1 14 1 zf-C2H2_4 137 159 1.54143e-44 146.9 0.00083 1.1 9.7
pfu_aug2.0_3.1_10039.t1 14 1 zf-C2H2_jaz 137 159 9.8e-17 60.5 0.064 86.0 3.4
pfu_aug2.0_3.1_10039.t1 12 1 zf-met 137 159 4.2e-13 49.0 0.12 160.0 2.6
pfu_aug2.0_3.1_10039.t1 15 2 zf-H2C2_2 162 175 0.0 170.6 0.0041 5.5 7.4
pfu_aug2.0_3.1_10039.t1 14 2 zf-C2H2 164 186 0.0 180.8 1.9e-06 0.0026 18.0
pfu_aug2.0_3.1_10039.t1 14 2 zf-C2H2_4 164 186 1.54143e-44 146.9 8.4e-06 0.011 15.9
pfu_aug2.0_3.1_10039.t1 14 2 zf-C2H2_6 164 186 8.1e-23 79.5 5.3e-05 0.071 13.0
pfu_aug2.0_3.1_10039.t1 14 2 zf-C2H2_jaz 164 187 9.8e-17 60.5 0.0042 5.7 7.2
pfu_aug2.0_3.1_10039.t1 12 2 zf-met 164 184 4.2e-13 49.0 0.25 340.0 1.6
pfu_aug2.0_3.1_10039.t1 15 3 zf-H2C2_2 182 187 0.0 170.6 1.9 2600.0 -1.0
pfu_aug2.0_3.1_10039.t1 9 2 C1_1 184 229 8.8e-06 25.3 0.014 18.0 5.1
pfu_aug2.0_3.1_10039.t1 14 3 zf-C2H2 193 215 0.0 180.8 0.00044 0.6 10.5
pfu_aug2.0_3.1_10039.t1 14 3 zf-C2H2_4 193 215 1.54143e-44 146.9 5.6e-05 0.076 13.3
pfu_aug2.0_3.1_10039.t1 14 3 zf-C2H2_6 194 210 8.1e-23 79.5 2.3 3100.0 -1.7
pfu_aug2.0_3.1_10039.t1 14 3 zf-C2H2_jaz 194 212 9.8e-17 60.5 0.0054 7.3 6.8
pfu_aug2.0_3.1_10039.t1 12 3 zf-met 194 212 4.2e-13 49.0 0.0011 1.5 9.1
pfu_aug2.0_3.1_10039.t1 15 4 zf-H2C2_2 206 231 0.0 170.6 1.8e-05 0.025 14.8
pfu_aug2.0_3.1_10039.t1 14 4 zf-C2H2 221 243 0.0 180.8 2.2e-05 0.03 14.6
pfu_aug2.0_3.1_10039.t1 14 4 zf-C2H2_4 221 243 1.54143e-44 146.9 0.00047 0.63 10.5
pfu_aug2.0_3.1_10039.t1 14 4 zf-C2H2_6 221 243 8.1e-23 79.5 5.4e-06 0.0073 16.1
pfu_aug2.0_3.1_10039.t1 14 4 zf-C2H2_jaz 221 240 9.8e-17 60.5 0.036 49.0 4.2
pfu_aug2.0_3.1_10039.t1 15 5 zf-H2C2_2 309 321 0.0 170.6 0.013 18.0 5.8
pfu_aug2.0_3.1_10039.t1 9 3 C1_1 310 350 8.8e-06 25.3 0.00013 0.17 11.6
pfu_aug2.0_3.1_10039.t1 14 5 zf-C2H2 314 336 0.0 180.8 3.4e-05 0.046 14.0
pfu_aug2.0_3.1_10039.t1 14 5 zf-C2H2_6 314 334 8.1e-23 79.5 0.0029 3.9 7.5
pfu_aug2.0_3.1_10039.t1 12 4 zf-met 314 333 4.2e-13 49.0 0.00043 0.58 10.4
pfu_aug2.0_3.1_10039.t1 14 5 zf-C2H2_4 315 336 1.54143e-44 146.9 9.9e-06 0.013 15.7
pfu_aug2.0_3.1_10039.t1 14 5 zf-C2H2_jaz 315 333 9.8e-17 60.5 0.00011 0.14 12.3
pfu_aug2.0_3.1_10039.t1 15 6 zf-H2C2_2 329 353 0.0 170.6 1.5e-07 0.0002 21.4
pfu_aug2.0_3.1_10039.t1 14 6 zf-C2H2 342 364 0.0 180.8 2.0e-06 0.0026 17.9
pfu_aug2.0_3.1_10039.t1 14 6 zf-C2H2_4 342 364 1.54143e-44 146.9 2.1e-05 0.028 14.7
pfu_aug2.0_3.1_10039.t1 14 6 zf-C2H2_6 342 365 8.1e-23 79.5 0.00032 0.44 10.5
pfu_aug2.0_3.1_10039.t1 9 4 C1_1 343 378 8.8e-06 25.3 0.0035 4.7 7.0
pfu_aug2.0_3.1_10039.t1 14 6 zf-C2H2_jaz 347 362 9.8e-17 60.5 4.3 5800.0 -2.4
pfu_aug2.0_3.1_10039.t1 15 7 zf-H2C2_2 357 380 0.0 170.6 5.1e-07 0.00068 19.8
pfu_aug2.0_3.1_10039.t1 14 7 zf-C2H2_6 369 392 8.1e-23 79.5 0.029 39.0 4.3
pfu_aug2.0_3.1_10039.t1 9 5 C1_1 369 409 8.8e-06 25.3 0.049 66.0 3.3
pfu_aug2.0_3.1_10039.t1 14 7 zf-C2H2 370 392 0.0 180.8 3.6e-07 0.00049 20.2
pfu_aug2.0_3.1_10039.t1 14 7 zf-C2H2_4 370 392 1.54143e-44 146.9 0.00079 1.1 9.7
pfu_aug2.0_3.1_10039.t1 12 5 zf-met 371 390 4.2e-13 49.0 0.17 230.0 2.2
pfu_aug2.0_3.1_10039.t1 14 7 zf-C2H2_jaz 372 389 9.8e-17 60.5 6.9 9300.0 -3.1
pfu_aug2.0_3.1_10039.t1 15 8 zf-H2C2_2 384 411 0.0 170.6 6.2e-07 0.00084 19.5
pfu_aug2.0_3.1_10039.t1 9 6 C1_1 395 410 8.8e-06 25.3 0.0097 13.0 5.5
pfu_aug2.0_3.1_10039.t1 14 8 zf-C2H2_6 399 410 8.1e-23 79.5 0.0014 1.9 8.5
pfu_aug2.0_3.1_10039.t1 14 8 zf-C2H2 400 422 0.0 180.8 9.5e-08 0.00013 22.1
pfu_aug2.0_3.1_10039.t1 14 8 zf-C2H2_4 400 422 1.54143e-44 146.9 4.9e-08 6.6e-05 22.9
pfu_aug2.0_3.1_10039.t1 14 8 zf-C2H2_jaz 400 420 9.8e-17 60.5 0.0011 1.5 9.0
pfu_aug2.0_3.1_10039.t1 12 6 zf-met 400 419 4.2e-13 49.0 0.0092 12.0 6.2
pfu_aug2.0_3.1_10039.t1 15 9 zf-H2C2_2 415 438 0.0 170.6 6.2e-08 8.3e-05 22.6
pfu_aug2.0_3.1_10039.t1 9 7 C1_1 420 466 8.8e-06 25.3 0.00096 1.3 8.8
pfu_aug2.0_3.1_10039.t1 14 9 zf-C2H2_6 427 451 8.1e-23 79.5 4.3e-06 0.0058 16.4
pfu_aug2.0_3.1_10039.t1 14 9 zf-C2H2 428 450 0.0 180.8 2.8e-05 0.038 14.3
pfu_aug2.0_3.1_10039.t1 14 9 zf-C2H2_4 428 446 1.54143e-44 146.9 0.015 20.0 5.7
pfu_aug2.0_3.1_10039.t1 14 9 zf-C2H2_jaz 428 446 9.8e-17 60.5 0.0066 8.9 6.5
pfu_aug2.0_3.1_10039.t1 12 7 zf-met 428 446 4.2e-13 49.0 7.7e-05 0.1 12.8
pfu_aug2.0_3.1_10039.t1 15 10 zf-H2C2_2 442 466 0.0 170.6 9.2e-06 0.012 15.8
pfu_aug2.0_3.1_10039.t1 14 10 zf-C2H2_6 454 466 8.1e-23 79.5 0.0039 5.3 7.0
pfu_aug2.0_3.1_10039.t1 14 10 zf-C2H2 455 477 0.0 180.8 3.2e-07 0.00043 20.4
pfu_aug2.0_3.1_10039.t1 14 10 zf-C2H2_4 455 477 1.54143e-44 146.9 1.3e-06 0.0018 18.4
pfu_aug2.0_3.1_10039.t1 14 10 zf-C2H2_jaz 455 474 9.8e-17 60.5 2.7e-06 0.0036 17.3
pfu_aug2.0_3.1_10039.t1 12 8 zf-met 457 474 4.2e-13 49.0 7.9e-06 0.011 15.9
pfu_aug2.0_3.1_10039.t1 15 11 zf-H2C2_2 470 494 0.0 170.6 0.0022 2.9 8.3
pfu_aug2.0_3.1_10039.t1 9 8 C1_1 479 505 8.8e-06 25.3 0.18 240.0 1.5
pfu_aug2.0_3.1_10039.t1 14 11 zf-C2H2 484 503 0.0 180.8 7.4e-06 0.01 16.1
pfu_aug2.0_3.1_10039.t1 14 11 zf-C2H2_jaz 484 503 9.8e-17 60.5 0.00041 0.56 10.4
pfu_aug2.0_3.1_10039.t1 14 11 zf-C2H2_4 485 505 1.54143e-44 146.9 0.00021 0.29 11.5
pfu_aug2.0_3.1_10039.t1 14 11 zf-C2H2_6 485 505 8.1e-23 79.5 0.057 77.0 3.3
pfu_aug2.0_3.1_10039.t1 12 9 zf-met 485 503 4.2e-13 49.0 0.00016 0.21 11.8
pfu_aug2.0_3.1_10039.t1 15 12 zf-H2C2_2 497 520 0.0 170.6 4.2e-09 5.7e-06 26.3
pfu_aug2.0_3.1_10039.t1 14 12 zf-C2H2 512 533 0.0 180.8 3.6e-07 0.00049 20.2
pfu_aug2.0_3.1_10039.t1 14 12 zf-C2H2_jaz 512 530 9.8e-17 60.5 0.0002 0.27 11.4
pfu_aug2.0_3.1_10039.t1 14 12 zf-C2H2_4 513 533 1.54143e-44 146.9 1.7e-06 0.0023 18.1
pfu_aug2.0_3.1_10039.t1 14 12 zf-C2H2_6 513 533 8.1e-23 79.5 0.021 28.0 4.7
pfu_aug2.0_3.1_10039.t1 12 10 zf-met 513 530 4.2e-13 49.0 0.00054 0.73 10.1
pfu_aug2.0_3.1_10039.t1 15 13 zf-H2C2_2 526 550 0.0 170.6 3.7e-10 5.0e-07 29.6
pfu_aug2.0_3.1_10039.t1 9 9 C1_1 536 574 8.8e-06 25.3 0.00027 0.36 10.5
pfu_aug2.0_3.1_10039.t1 14 13 zf-C2H2 539 561 0.0 180.8 1.8e-09 2.4e-06 27.5
pfu_aug2.0_3.1_10039.t1 14 13 zf-C2H2_6 539 562 8.1e-23 79.5 9.3e-08 0.00013 21.7
pfu_aug2.0_3.1_10039.t1 14 13 zf-C2H2_jaz 539 561 9.8e-17 60.5 7.9e-06 0.011 15.8
pfu_aug2.0_3.1_10039.t1 12 11 zf-met 540 559 4.2e-13 49.0 1.0e-05 0.014 15.6
pfu_aug2.0_3.1_10039.t1 14 13 zf-C2H2_4 541 561 1.54143e-44 146.9 2.3e-08 3.1e-05 23.9
pfu_aug2.0_3.1_10039.t1 15 14 zf-H2C2_2 553 577 0.0 170.6 1.8e-09 2.4e-06 27.5
pfu_aug2.0_3.1_10039.t1 14 14 zf-C2H2 567 589 0.0 180.8 4.8e-08 6.5e-05 23.0
pfu_aug2.0_3.1_10039.t1 14 14 zf-C2H2_4 567 589 1.54143e-44 146.9 3.0e-06 0.004 17.3
pfu_aug2.0_3.1_10039.t1 14 14 zf-C2H2_6 567 589 8.1e-23 79.5 0.0013 1.7 8.6
pfu_aug2.0_3.1_10039.t1 14 14 zf-C2H2_jaz 567 589 9.8e-17 60.5 2.9e-05 0.04 14.0
pfu_aug2.0_3.1_10039.t1 12 12 zf-met 567 589 4.2e-13 49.0 0.025 34.0 4.8
pfu_aug2.0_3.1_10039.t1 15 15 zf-H2C2_2 582 591 0.0 170.6 1.6 2200.0 -0.8

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_3.1_10039.t1 gi|395514081|ref|XP_003761249.1| 0.0
pfu_aug2.0_3.1_10039.t1 gi|512884762|ref|XP_004920301.1| 0.0
pfu_aug2.0_3.1_10039.t1 gi|589968014|ref|XP_006996505.1| PREDICTED: zinc finger protein 709-like [Peromyscus maniculatus bairdii] 0.0
pfu_aug2.0_3.1_10039.t1 gi|674034548|ref|XP_008839396.1| PREDICTED: zinc finger protein 260-like isoform X2 [Nannospalax galili] 0.0
pfu_aug2.0_3.1_10039.t1 gi|562824753|ref|XP_006142120.1| PREDICTED: zinc finger protein 180 isoform X2 [Tupaia chinensis] 0.0

Transcript
Transcript IDpfu_aug2.0_3.1_10039.t1
Definition- 
>pfu_aug2.0_3.1_10039.t1
atgtcctggacctgccatcctgttactatggatgcagccaggatggagatagatctgtcagtggtggcccagaagctgaa
gaatctcatgaatctgttgggtcagctctcagcttatcagatccccaacaatcaggccatcctgcttaggatctctgtcc
atctacaccagtctgaggaaagtctacagcgagccctgagggtactggcaaagggtgtggtcggtgaggacccaggaccc
atccatggactaaatctggatgacttgacaagggacgataatgcaaaaagaaaaaatgaagaagaggggaggagtgttga
ttatgtaaatggtgagatgtaccttagccaagatgaagatgggaatgatgatatgcctgaggatgattcaaagaagatag
agaaaccatacaaatgcagtcaatgtgacgaaacttttggcacaaaatttcacttggcaggtcatgaacaaagtcatgca
gcaaaatcttacaagtgctctgattgtaatgaagaattttctactagcacggaatggactctacatttgaaaaaacataa
actcagccttgctgccaaatgtaactgctgtaataaggtactgagcacacgtaaagctcttctcaagcactacaaaaggg
tgcacccaaagtacaaagccttcaaatgtaacgagtgtccgaaacgcttcaaattctttgcggatctgatggagcataag
aaagcccatgctgaaggagtaacagagggagaaagtgcgaaggatgcaggagaaaaaatcaagaaagaaagtgaagaagg
tggtgctgaagatggtgagaagaaggaatcagacagagatgatgatgatgatgatatgatggaggaagaaatggtcgatc
ataaaactcataaccagcccaaaaagaaaaatcctctgaagaagaaaccacggccggccacttgtaaggtctgtggcaag
gtacttagcaacagaaaggccatgttgaaacatatacgtcaagtacatccagaggaaaacggataccagtgtaataaatg
tgatgaggcgtttaagacatttgacgaattgcgtctacataagaagattcacatgggagagaagattcatcaatgtgagt
ggtgtgaccagtcgtttgctgacaagtactcgctgaccacacataccaggaaacacgtcaaccaggtgctgagaccttac
aagtgtgaacaatgtggcaagagctttacacacaagtggactctcgataaacacgtcaaaagacactccacagacaggcc
atttgaatgtacagtgtgtaaaaagacattcgtatttcaagaggatctgaatgcacatagccagtttcattctgataaca
tatacccgtgcacactgtgtgacaaggtctttaaccataagaggactttggccaatcacatggtccggcactctgggata
agaaccaatgtctgtgaaatgtgcggaaaatccttctacactaagcatgctttaatgatgcacattcgctgtcacacagg
agagaaacctgctgtctgtgaaatttgtggtaaaggattccgagctaggaactatctcagaaatcacatgttgatgcaca
gtggagagaaacctcacatgtgtagtgtatgtggcaaaagctttagccgtaaagataacctacgacaacacatgcagaca
cacagcgggatcaagtcgtttacatgtgaccagtgtggtaaaggattcggtaggaagaagatgctagagaaacacatgga
gagtcatggtgtcttcaatgaagtaccaacatctgctgaagttgccgctcaaatcgttcttaacaagaaggactttagag
atgggagccttgtcaccagtacagctaccacctcatccagttctcttcccttgtctatgcccccaaccatggcccctatc
acctgtaggatgcctccacccccttcctctgccgccctcagtaatgatggtagtaacatgagtacccagagtacctccca
ccccatcaacaccacaggtaacccagcaggcacacccgtacccccaccgtggaggatgccgtatgagggataccccacag
ccagtcaaatagaaactgctgccagccagtttggatacttacatcttattaatagcatgaatatgaatcaaggaaatgat
ttcatgatgtag

Protein
Protein IDpfu_aug2.0_3.1_10039.t1
Definition- 
>pfu_aug2.0_3.1_10039.t1
MSWTCHPVTMDAARMEIDLSVVAQKLKNLMNLLGQLSAYQIPNNQAILLRISVHLHQSEESLQRALRVLAKGVVGEDPGP
IHGLNLDDLTRDDNAKRKNEEEGRSVDYVNGEMYLSQDEDGNDDMPEDDSKKIEKPYKCSQCDETFGTKFHLAGHEQSHA
AKSYKCSDCNEEFSTSTEWTLHLKKHKLSLAAKCNCCNKVLSTRKALLKHYKRVHPKYKAFKCNECPKRFKFFADLMEHK
KAHAEGVTEGESAKDAGEKIKKESEEGGAEDGEKKESDRDDDDDDMMEEEMVDHKTHNQPKKKNPLKKKPRPATCKVCGK
VLSNRKAMLKHIRQVHPEENGYQCNKCDEAFKTFDELRLHKKIHMGEKIHQCEWCDQSFADKYSLTTHTRKHVNQVLRPY
KCEQCGKSFTHKWTLDKHVKRHSTDRPFECTVCKKTFVFQEDLNAHSQFHSDNIYPCTLCDKVFNHKRTLANHMVRHSGI
RTNVCEMCGKSFYTKHALMMHIRCHTGEKPAVCEICGKGFRARNYLRNHMLMHSGEKPHMCSVCGKSFSRKDNLRQHMQT
HSGIKSFTCDQCGKGFGRKKMLEKHMESHGVFNEVPTSAEVAAQIVLNKKDFRDGSLVTSTATTSSSSLPLSMPPTMAPI
TCRMPPPPSSAALSNDGSNMSTQSTSHPINTTGNPAGTPVPPPWRMPYEGYPTASQIETAASQFGYLHLINSMNMNQGND
FMM

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495