Gene
| Gene Model ID | pfu_aug2.0_3.1_10043 |
|---|---|
| Locus | scaffold3.1 : 599597 ... 612241 : - |
| To GenomeBrowser | scaffold3.1:599597..612241 |
| Genes list of scaffold | scaffold3.1 |
| Synonym | pfu_aug1.0_27637.1_19191 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| biogenesis of lysosome-related organelles complex 1 subunit 6 | GO:0005768 GO:0006904 GO:0006906 GO:0007596 GO:0008089 GO:0030318 GO:0031083 GO:0031175 GO:0032816 GO:0033059 GO:0033299 GO:0042802 GO:0044425 GO:0048490 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3.1_10043.t1 | 1 | 1 | Snapin_Pallidin | 71 | 154 | 1.1e-16 | 60.8 | 1.2e-20 | 1.8e-16 | 60.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3.1_10043.t1 | gi|395837872|ref|XP_003791852.1| | PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 6 [Otolemur garnettii] | 4.0e-21 |
| pfu_aug2.0_3.1_10043.t1 | gi|524912528|ref|XP_005111111.1| | PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 6-like [Aplysia californica] | 4.0e-20 |
| pfu_aug2.0_3.1_10043.t1 | gi|291242476|ref|XP_002741133.1| | PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 6-like [Saccoglossus kowalevskii] | 8.0e-20 |
| pfu_aug2.0_3.1_10043.t1 | gi|488589939|ref|XP_004480249.1| | PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 6 [Dasypus novemcinctus] | 1.0e-19 |
| pfu_aug2.0_3.1_10043.t1 | gi|291403090|ref|XP_002717791.1| | PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 6 [Oryctolagus cuniculus] | 2.0e-19 |
Transcript
| Transcript ID | pfu_aug2.0_3.1_10043.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3.1_10043.t1 atgagcacagacaaccaatcagaacatcagcaggatggaaagaaagatgaaggaataacacctgttgaaaggaaagatga agaaacaccagagactattactgaggtacctaacagtgccaagagtgagaaagacttagagggcactgaaaacactgata tagtggaagcagaaaatgaagaattacctgaaattgatccagcaattttagagagattatcgtttgggctgttagaaaag tgcctgcccagtttacagaaggccaaaagtgtcctagatgatgtactacaaaatcagggtatattgattgactctgtaca acaagagaactctaagtttgatgagtgcaaggcaatgaatgagctaaatgaaacgatgatccaagcaaagaagtatcata gtaagctggtgactctgaagaaagaaatgaacaacctgacagataaatcatttaaactcaagacctttccatggatacca aaagtcttgaccttgtga |
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Protein
| Protein ID | pfu_aug2.0_3.1_10043.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3.1_10043.t1 MSTDNQSEHQQDGKKDEGITPVERKDEETPETITEVPNSAKSEKDLEGTENTDIVEAENEELPEIDPAILERLSFGLLEK CLPSLQKAKSVLDDVLQNQGILIDSVQQENSKFDECKAMNELNETMIQAKKYHSKLVTLKKEMNNLTDKSFKLKTFPWIP KVLTL |
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