Gene
| Gene Model ID | pfu_aug2.0_3.1_10044 |
|---|---|
| Locus | scaffold3.1 : 612342 ... 618169 : + |
| To GenomeBrowser | scaffold3.1:612342..618169 |
| Genes list of scaffold | scaffold3.1 |
| Synonym | pfu_aug1.0_22861.1_26051 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| proteasome subunit beta type-4 | GO:0004298 GO:0005634 GO:0005737 GO:0005839 GO:0051603 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3.1_10044.t1 | 1 | 1 | Proteasome | 46 | 185 | 2.9e-21 | 75.6 | 2.4e-25 | 3.6e-21 | 75.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3.1_10044.t1 | gi|676438768|ref|XP_009048638.1| | hypothetical protein LOTGIDRAFT_230810 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_3.1_10044.t1 | gi|658874974|ref|XP_008420470.1| | PREDICTED: proteasome subunit beta type-4 [Poecilia reticulata] | 0.0 |
| pfu_aug2.0_3.1_10044.t1 | gi|617445225|ref|XP_007566600.1| | PREDICTED: proteasome subunit beta type-4 [Poecilia formosa] | 0.0 |
| pfu_aug2.0_3.1_10044.t1 | gi|675867912|ref|XP_009019516.1| | hypothetical protein HELRODRAFT_65558 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_3.1_10044.t1 | gi|390356174|ref|XP_795143.3| | PREDICTED: proteasome subunit beta type-4 [Strongylocentrotus purpuratus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3.1_10044.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3.1_10044.t1 atggaaacagaatttgcaagtgctttttggcgaaatggtccacaaccaggcgctatttatcagtttcctggaaaacaaac aacacagaatacatctcagataggtgccgcaaagagaactttacaaccaacagtgactgggacatcagtacttggtttga agtttgatggaggtatcatcattgctgcagacatgctgggttcgtatggttctctggcgcgataccgtaacttatccagg ttgatgaaggtgaacgataatactgtcataggaatgggtggtgattatgctgacttccagttcttacagtccattataga acaaagagtcattgaagaggagtgcttgaatgatggatttagttacacaccaaagagtctgtcctcctggatgaccaggg ttatgtacaacaggagatctaacttcaatccgctgtggaacacatatctagtgggaggtctacaagacggagaaccttac ctcagctacatagataaaatagggatagcatttgaagcaccgactgttgcatgtggatttggcagttacatagctttgat ttttccatccaatccccagaaatag |
|
Protein
| Protein ID | pfu_aug2.0_3.1_10044.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3.1_10044.t1 METEFASAFWRNGPQPGAIYQFPGKQTTQNTSQIGAAKRTLQPTVTGTSVLGLKFDGGIIIAADMLGSYGSLARYRNLSR LMKVNDNTVIGMGGDYADFQFLQSIIEQRVIEEECLNDGFSYTPKSLSSWMTRVMYNRRSNFNPLWNTYLVGGLQDGEPY LSYIDKIGIAFEAPTVACGFGSYIALIFPSNPQK |
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