Gene
| Gene Model ID | pfu_aug2.0_3.1_10049 |
|---|---|
| Locus | scaffold3.1 : 706882 ... 726926 : + |
| To GenomeBrowser | scaffold3.1:706882..726926 |
| Genes list of scaffold | scaffold3.1 |
| Synonym | pfu_aug1.0_4230.1_16321 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| mothers against decapentaplegic homolog 6 | GO:0003677 GO:0005634 GO:0005768 GO:0007179 GO:0007507 GO:0010693 GO:0030514 GO:0032331 GO:0043234 GO:0046332 GO:0060394 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3.1_10049.t1 | 2 | 1 | MH1 | 36 | 128 | 1.6e-23 | 82.6 | 3.1e-27 | 2.3e-23 | 82.1 |
| pfu_aug2.0_3.1_10049.t1 | 2 | 2 | MH1 | 189 | 203 | 1.6e-23 | 82.6 | 0.4 | 3000.0 | -1.8 |
| pfu_aug2.0_3.1_10049.t1 | 1 | 1 | MH2 | 193 | 360 | 0.0 | 161.6 | 0.0 | 0.0 | 161.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3.1_10049.t1 | gi|573881203|ref|XP_006628799.1| | PREDICTED: mothers against decapentaplegic homolog 6-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_3.1_10049.t1 | gi|683912504|ref|XP_009088440.1| | PREDICTED: mothers against decapentaplegic homolog 6 [Serinus canaria] | 0.0 |
| pfu_aug2.0_3.1_10049.t1 | gi|676464109|ref|XP_009056816.1| | hypothetical protein LOTGIDRAFT_145516 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_3.1_10049.t1 | gi|259013311|ref|NP_001158449.1| | SMAD family member 6 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_3.1_10049.t1 | gi|729748225|ref|XP_010570617.1| | PREDICTED: mothers against decapentaplegic homolog 6 [Haliaeetus leucocephalus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3.1_10049.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3.1_10049.t1 atgtttcggtctaaaagatctaccctcgtgaaacgtctgtggaaaaataggattatacataatgaaaccgcgggtaaaaa tgaaagcgacgaggaattagagctaaaatcaattatacattctatgctgaaacgtttgaaggagaaaaacttagaaattt tagtgcaaagtgtagaaacaaaaggcggagaggatactccttgtgtactattaccgagtggcgagatgaagttagggaag agaagtgtaccgcctcattatgtttgttgtcagatttggcgctggcaggacctaacccccacctcacccttgaggcaact acccagctgtcaaactgttaatgattcagcgtatacttgctgtaacccatatcactggagtatagaacaaaatatagatc ttccccctgtgccaaactttgaacaattagacctggacgaccatgctaagatatcagaggatgtatggtcacagaatcac gttatggagtgtgtttccacggaaactggattcacaccttcacctcgacaggatctatcagatttgtctgaagaaacctc tgacgttcaaaatggccaccatcactggtgtactgtggcatactgggaattaaggcagcgtatgggacgtttgtacactg tacacaatcctcatgtaaatattttccaaagtctacctcacggcgatggattgtcgctggaactattacaggaaaaatca gaacttgattctgtgcggaggacgcgtgaaaagatcgggttcggtgtgattctgagcagggagagaggaggggtgtggtt gtacaatagatcgctatatccggtttttgtgaactctccaatgttggatattccaaactcacggacatcggttgtgatca aggtgtctccgggttactccatgaaaatttttgattacgagtacgcttttgtgatgaagcaggtgtacgaacgacaattt ttagacggtccctacgacccaacgtcaatccgtgtaagctttgccaaagggtggggcccatcttaccacagacaatttgt gacgtcatgtccgtgttggatagaaattttattgaacgtccacagattcgtctccagcattttatga |
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Protein
| Protein ID | pfu_aug2.0_3.1_10049.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3.1_10049.t1 MFRSKRSTLVKRLWKNRIIHNETAGKNESDEELELKSIIHSMLKRLKEKNLEILVQSVETKGGEDTPCVLLPSGEMKLGK RSVPPHYVCCQIWRWQDLTPTSPLRQLPSCQTVNDSAYTCCNPYHWSIEQNIDLPPVPNFEQLDLDDHAKISEDVWSQNH VMECVSTETGFTPSPRQDLSDLSEETSDVQNGHHHWCTVAYWELRQRMGRLYTVHNPHVNIFQSLPHGDGLSLELLQEKS ELDSVRRTREKIGFGVILSRERGGVWLYNRSLYPVFVNSPMLDIPNSRTSVVIKVSPGYSMKIFDYEYAFVMKQVYERQF LDGPYDPTSIRVSFAKGWGPSYHRQFVTSCPCWIEILLNVHRFVSSIL |
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