Gene
| Gene Model ID | pfu_aug2.0_3.1_10059 |
|---|---|
| Locus | scaffold3.1 : 836902 ... 844723 : + |
| To GenomeBrowser | scaffold3.1:836902..844723 |
| Genes list of scaffold | scaffold3.1 |
| Synonym | pfu_aug1.0_87673.1_35045 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rem2- and rab-like small gtpase 1 | GO:0000166 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3.1_10059.t3 | 1 | 1 | Miro | 56 | 138 | 3.0e-08 | 34.1 | 4.3e-11 | 4.0e-08 | 33.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3.1_10059.t3 | gi|260841657|ref|XP_002614027.1| | hypothetical protein BRAFLDRAFT_67389 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_3.1_10059.t3 | gi|564268619|ref|XP_006273096.1| | PREDICTED: REM2- and Rab-like small GTPase 1 [Alligator mississippiensis] | 5.0e-40 |
Transcript
| Transcript ID | pfu_aug2.0_3.1_10059.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3.1_10059.t1 atgaccacacccaaagataacacatgtaaaattgtcataggtaccaaattcgatcaacatgctcacagtgagatcacaca gcgtgatatcagagacttcgaacagaattggaaaataccgatcctcaagatccgtaatgttcctgacaccgagggtcgta accataccaatgaaacgtcacagatactgtgtgtgttatgtgaacacttgtggcatagagacattatcatggctggtaga tcaccatcaacggatgactcgaaggataaacagaactttgtgtga |
|
| Transcript ID | pfu_aug2.0_3.1_10059.t2 |
| Definition | - |
>pfu_aug2.0_3.1_10059.t2 atgataagtcctggcactctattaaatcaagaatggtatggttccccacagggaagggaagttctggcaaccttgcttca taagagccaacaaaggagaaagacttttggattgctagagaaaccaatgataggtgttcattgccccactgatgaagtta aatacaaagtcttcctagtgggaaagagtggtgtgggtaagaccagcactgtagcaaagatatctggaaatgccgtcccc acagcacacagcgaaacaccaggaatccagactaccacagtttactgggcgggacaggtgaagcagcttaacaaagttat catgttcagtcttcagttttgggacgcaggggaaagtgccacaaagaaatacgatcatatacttcctgcatgtgttgcac aggcagattgcataatctttttatttagttttgtggacaggagtagctttgaggatgtatcacagttaatcaccaagatg accacacccaaagataacacatgtaaaattgtcataggtaccaaattcgatcaacatgctcacagtgagatcacacagcg tgatatcagagacttcgaacagaattggaaaataccgatcctcaagatccgtaatgttcctgacaccgagggtcgtaacc ataccaatgaaacgtcacagatactgtgtgtgttatgtgaacacttgtggcatagagacattatcatggctggtagatca ccatcaacggatgactcgaaggataaacagaactttgtgtga |
|
| Transcript ID | pfu_aug2.0_3.1_10059.t3 |
| Definition | - |
>pfu_aug2.0_3.1_10059.t3 atgataagtcctggcactctattaaatcaagaatggtatggttccccacagggaagggaagttctggcaaccttgcttca taagagccaacaaaggagaaagacttttggattgctagagaaaccaatgataggtgttcattgccccactgatgaagtta aatacaaagtcttcctagtgggaaagagtggtgtgggtaagaccagcactgtagcaaagatatctggaaatgccgtcccc acagcacacagcgaaacaccaggaatccagactaccacagtttactgggcgggacaggtgaagcagcttaacaaagttat catgttcagtcttcagttttgggacgcaggggaaagtgccacaaagaaatacgatcatatacttcctctcaaatttacat cgatagacatgatctatgtcatgaacaccctttgtttcttgaggtcatag |
|
Protein
| Protein ID | pfu_aug2.0_3.1_10059.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3.1_10059.t1 MTTPKDNTCKIVIGTKFDQHAHSEITQRDIRDFEQNWKIPILKIRNVPDTEGRNHTNETSQILCVLCEHLWHRDIIMAGR SPSTDDSKDKQNFV |
|
| Protein ID | pfu_aug2.0_3.1_10059.t2 |
| Definition | - |
>pfu_aug2.0_3.1_10059.t2 MISPGTLLNQEWYGSPQGREVLATLLHKSQQRRKTFGLLEKPMIGVHCPTDEVKYKVFLVGKSGVGKTSTVAKISGNAVP TAHSETPGIQTTTVYWAGQVKQLNKVIMFSLQFWDAGESATKKYDHILPACVAQADCIIFLFSFVDRSSFEDVSQLITKM TTPKDNTCKIVIGTKFDQHAHSEITQRDIRDFEQNWKIPILKIRNVPDTEGRNHTNETSQILCVLCEHLWHRDIIMAGRS PSTDDSKDKQNFV |
|
| Protein ID | pfu_aug2.0_3.1_10059.t3 |
| Definition | - |
>pfu_aug2.0_3.1_10059.t3 MISPGTLLNQEWYGSPQGREVLATLLHKSQQRRKTFGLLEKPMIGVHCPTDEVKYKVFLVGKSGVGKTSTVAKISGNAVP TAHSETPGIQTTTVYWAGQVKQLNKVIMFSLQFWDAGESATKKYDHILPLKFTSIDMIYVMNTLCFLRS |
|