Gene
| Gene Model ID | pfu_aug2.0_3.1_10060 |
|---|---|
| Locus | scaffold3.1 : 844279 ... 872201 : - |
| To GenomeBrowser | scaffold3.1:844279..872201 |
| Genes list of scaffold | scaffold3.1 |
| Synonym | pfu_aug1.0_28818.1_26438 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3.1_10060.t1 | 3 | 1 | LRR_8 | 118 | 151 | 7.0e-07 | 28.9 | 0.15 | 440.0 | 0.7 |
| pfu_aug2.0_3.1_10060.t1 | 4 | 1 | LRR_4 | 184 | 224 | 1.8e-08 | 33.8 | 1.1e-08 | 3.2e-05 | 23.4 |
| pfu_aug2.0_3.1_10060.t1 | 3 | 2 | LRR_8 | 184 | 247 | 7.0e-07 | 28.9 | 1.2e-07 | 0.00035 | 20.2 |
| pfu_aug2.0_3.1_10060.t1 | 4 | 2 | LRR_4 | 208 | 254 | 1.8e-08 | 33.8 | 1.6e-08 | 4.8e-05 | 22.8 |
| pfu_aug2.0_3.1_10060.t1 | 4 | 3 | LRR_4 | 435 | 472 | 1.8e-08 | 33.8 | 0.0021 | 6.2 | 6.5 |
| pfu_aug2.0_3.1_10060.t1 | 3 | 3 | LRR_8 | 435 | 446 | 7.0e-07 | 28.9 | 0.014 | 42.0 | 3.9 |
| pfu_aug2.0_3.1_10060.t1 | 4 | 4 | LRR_4 | 808 | 819 | 1.8e-08 | 33.8 | 2.5 | 7400.0 | -3.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3.1_10060.t1 | gi|676426222|ref|XP_009044555.1| | hypothetical protein LOTGIDRAFT_230081, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_3.1_10060.t1 | gi|524896509|ref|XP_005104728.1| | PREDICTED: X-ray radiation resistance-associated protein 1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_3.1_10060.t1 | gi|390340286|ref|XP_789842.3| | PREDICTED: X-ray radiation resistance-associated protein 1 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_3.1_10060.t1 | gi|291237400|ref|XP_002738623.1| | PREDICTED: X-ray radiation resistance-associated protein 1-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_3.1_10060.t1 | gi|641749849|ref|XP_008174145.1| | PREDICTED: X-ray radiation resistance-associated protein 1 isoform X1 [Chrysemys picta bellii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3.1_10060.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3.1_10060.t1 atggccgccgttccatgggtgaaatatgacgaaggcacagaatctgatgcctttgctgcaaattgtttccctgttcgtgg tttgatacgtcaagctgaagatggtggtggggcttggctagttgctcaaaaagcagaacagagacggcgttttaaggcag tattatgtgccaagccacgcacatattcccggatcaaagaggagaggaaacgtgcagagcgtgaaggtggccagatcaat gttgccacacaaagcctggctgatgatgaggaggaggaggaggaagcagaggctcctactttagatggattcttcttgat gaagcattgctgtgttgaagaccctgcagatttatgctccgtgaacatttcgggacaagagcttagtgaagttaaggagg aggatttcgccctctttgataatgtggcctatgtaaatgctgccgagaattacctcccttttgaggcttttcgtggattt cctatcattcgtgagttagagatgccaataaatggacttagaggacttaaagtacaacctagtgattatcctacactaga gatggttgatttgtcgtacaataatttgtcccaagaagatatcttgtccttaggaaccattccaaacctaaaaattcttc acctaacagggaataattttcggactttacctcaagacttagctctcccacatattgactctcagaggttaagacatctg aacttagaaaagaatgaaatctattatgtccctcagctaaaatctatagagggaacaatgacagtaaatgaagatgaaaa agccactcgccgacttcaaaggtcagctaggaggtcagccaggcattcctcaaggtcaactagacaatcaaagtcacaag atactgatgttgctaagcaaccaagtaaaagtcaaagtgatgtgaaacaaagtgaaagtaagaatttgatggaagtagag tcacaacagctgatgataaagacgtcaccaggaggaacggatggtaccgtaaccactccacctaaagaggaaaaagtaga cggggctcataacggccaggaggaggctaaggaaggggaggttacagagccaactacaacagagaaagaagaaaagaaag atgataacttgttagatctagagtttggtaatgaccttggtgacctatcagccagaatgaaggacattgatgtaagtgct gagaatgaccttgaggtaaccacaactgaccgtggagataaacctcccagattaaatttggatgagggacagaaagtagg acatggttctccagctttccaagaactgacttacctcaatctggcccataacatgatagtagaggaggaggcattattgg ctgtagctgcctggcccatgctggtagagctgctaatacatgacaatccactcactacagagaacagcggagatccacct ctacttaatacattcctgtcagaaaggctgggcatccggattgtcaggaaaccatccaagggcatcaagaaaccagaggt caaagtacaagccaaaaagtccagaaaggtttccactatagtaccaaagataccaaaagttcctgttgaagagttgctga tgcttgaggcaccaaagcctccctctggagctaaacccggcagtaaaaccatccagggactggacttacatcaacagggt ccattacctcctatccctcctacaagtcaacaacgccctcattccacaggtccaggggcaagaaagatggcaaccccagc agaggacctgccccctgcacctgtatatgataaattattctcagattcccctgtaccaccagatgatcccctccctggtc cccctgtgtatggtcgtgtgcactcaggacacaagtctaatctaccagaagcagctacctatggtaggatgcattcccca ccagaccagacagaagcccctgcaggaggcattccagaggctccagtatatggtagagtccactcccaggagggccatgt agatacagaggaaggtctaccacaggctgcctcgtatggcagattacactcacaggaacagacagataaacaaggagtag aaagcccagcattcttcatgactcaggttgatgaaccagaggaacgtgcacagaagaccaaaccaaccacagaggcaaag aagaagagagaaaagaaaaaagagaaaaagaagccggtagatgacagatataaaggttacgagattttacttgattttga ggaggatccagattttgtcccaccgaatgatatgcagggaaatgtgaaggcattgaagtatgcattaaatcaccagcttg tgtacagggatcctgaggcacgactagacaaagtcagaaaacatgtggaaccttatagaaggtggcagatgccccctcca gcccaaagaaggacaagacaggagaaagtggatgaggtgctttctaacctcaagaaccgtgtgacgacggaggaggcaaa ccttggtgaggtactgaaggacaaacgcaagtctcacaaacagtatacggaggcacagggactactggtggatattcagc gacgttataatgcagtacgagtaaattcaatgaaggaagccaaggacatgaagaaggccatggaggatctacaatctctg gctagaggcaataccgtggctgccaagtga |
|
Protein
| Protein ID | pfu_aug2.0_3.1_10060.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3.1_10060.t1 MAAVPWVKYDEGTESDAFAANCFPVRGLIRQAEDGGGAWLVAQKAEQRRRFKAVLCAKPRTYSRIKEERKRAEREGGQIN VATQSLADDEEEEEEAEAPTLDGFFLMKHCCVEDPADLCSVNISGQELSEVKEEDFALFDNVAYVNAAENYLPFEAFRGF PIIRELEMPINGLRGLKVQPSDYPTLEMVDLSYNNLSQEDILSLGTIPNLKILHLTGNNFRTLPQDLALPHIDSQRLRHL NLEKNEIYYVPQLKSIEGTMTVNEDEKATRRLQRSARRSARHSSRSTRQSKSQDTDVAKQPSKSQSDVKQSESKNLMEVE SQQLMIKTSPGGTDGTVTTPPKEEKVDGAHNGQEEAKEGEVTEPTTTEKEEKKDDNLLDLEFGNDLGDLSARMKDIDVSA ENDLEVTTTDRGDKPPRLNLDEGQKVGHGSPAFQELTYLNLAHNMIVEEEALLAVAAWPMLVELLIHDNPLTTENSGDPP LLNTFLSERLGIRIVRKPSKGIKKPEVKVQAKKSRKVSTIVPKIPKVPVEELLMLEAPKPPSGAKPGSKTIQGLDLHQQG PLPPIPPTSQQRPHSTGPGARKMATPAEDLPPAPVYDKLFSDSPVPPDDPLPGPPVYGRVHSGHKSNLPEAATYGRMHSP PDQTEAPAGGIPEAPVYGRVHSQEGHVDTEEGLPQAASYGRLHSQEQTDKQGVESPAFFMTQVDEPEERAQKTKPTTEAK KKREKKKEKKKPVDDRYKGYEILLDFEEDPDFVPPNDMQGNVKALKYALNHQLVYRDPEARLDKVRKHVEPYRRWQMPPP AQRRTRQEKVDEVLSNLKNRVTTEEANLGEVLKDKRKSHKQYTEAQGLLVDIQRRYNAVRVNSMKEAKDMKKAMEDLQSL ARGNTVAAK |
|