Gene
| Gene Model ID | pfu_aug2.0_3.1_10061 |
|---|---|
| Locus | scaffold3.1 : 899562 ... 926710 : + |
| To GenomeBrowser | scaffold3.1:899562..926710 |
| Genes list of scaffold | scaffold3.1 |
| Synonym | pfu_aug1.0_1564.1_51336 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| probable atp-dependent dna helicase hfm1 isoform x1 | GO:0000712 GO:0043231 GO:0097159 GO:1901363 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3.1_10061.t1 | 2 | 1 | ResIII | 104 | 173 | 1.4e-07 | 31.5 | 1.5 | 3800.0 | -2.5 |
| pfu_aug2.0_3.1_10061.t1 | 1 | 1 | DEAD | 240 | 420 | 2.2e-24 | 85.8 | 1.9e-27 | 4.6e-24 | 84.8 |
| pfu_aug2.0_3.1_10061.t1 | 2 | 2 | ResIII | 250 | 419 | 1.4e-07 | 31.5 | 2.4e-10 | 5.9e-07 | 29.4 |
| pfu_aug2.0_3.1_10061.t1 | 1 | 1 | Helicase_C | 505 | 580 | 1.0e-08 | 34.8 | 1.1e-11 | 2.6e-08 | 33.5 |
| pfu_aug2.0_3.1_10061.t1 | 1 | 1 | Sec63 | 593 | 860 | 3.20001e-41 | 141.5 | 2.66247e-44 | 6.50006e-41 | 140.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3.1_10061.t1 | gi|390338797|ref|XP_787324.3| | 0.0 | |
| pfu_aug2.0_3.1_10061.t1 | gi|589946429|ref|XP_006985894.1| | PREDICTED: probable ATP-dependent DNA helicase HFM1 [Peromyscus maniculatus bairdii] | 0.0 |
| pfu_aug2.0_3.1_10061.t1 | gi|672075496|ref|XP_008768170.1| | PREDICTED: probable ATP-dependent DNA helicase HFM1 isoform X5 [Rattus norvegicus] | 0.0 |
| pfu_aug2.0_3.1_10061.t1 | gi|300797867|ref|NP_001178030.1| | probable ATP-dependent DNA helicase HFM1 [Rattus norvegicus] | 0.0 |
| pfu_aug2.0_3.1_10061.t1 | gi|755512580|ref|XP_011247789.1| | PREDICTED: probable ATP-dependent DNA helicase HFM1 isoform X4 [Mus musculus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3.1_10061.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3.1_10061.t1 atgttctcacaaattcctgaggcaccagatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggagattgt aattatccttccctggaagaggatgtttcctttggattcggatcttctcagatttctattgggaatttgtcacaaacatt agataaaatcaacagtactgccagtgataatgaagcattacgacaaactagtactcctgtcactcagaaattatgtctag taaagaagaggcagttgttccatcctccactccaaaagatcatacaccaggacacaaagaaagtcaaattaacagataca gccaataagctagatcgccagaatgaaaaggcacttgaatctaagacacccagaaaaaatcttggagatttacacatgtg ggaaactccagcctcagatcatgcgaccaatacaaggggttatactccgtctccacttgttttgcaacatggaattcatg aaggagtaaagctgaagtctgtgacagagctaccagaaaaatacagacctgtttttagttttccatttttcaatgttgtc caatcaaaagtatttgatgaggttttttactcagataagccagttgtgctttgtgctcctactggggctggtaaaacagt tatctttgaacttgccatcatcagaatgataatgaaattggaagttactcaaatgcagaataattacaaggttgtttaca tggcaccaattaaagcactttgcagggagagatttgtagactggcagcagaagtttacgtgttatgggatgatatgtcag gagttgacaggcgactctgacattgatgattataatcaattacaggatgtcaacatgatatttacaacacctgagaagtg ggatagcatgacaaggaaatggagggacaacaaattcctggtgcaatctgtcagcttatttcttgtagatgagattcaca tgctgaatgacagtacaagaggttctactatagaggctgtagtatccaggatgaagaccatacaacaagctctctccaga tccatgtcgaacagtcccaatccacagctcagatttatagcagtctctgccaccatccctaatattattgatgttgcaca ctggttaggagatggagaaaatcctgcaacacattttaagttagatgagagctataggcctgtggtgcttcggaagttct gttccacaagaaaaagcacacagcaggcagcagaaatcttggtgaaagattccaatggtatgtatgtcaggtctacagat cagaggcagatactactgaccaatgctaatatgctgaaagacaacaaactaagagatctggtaatgaaaggcgtgggcta ccatcatgcaggtttagatattcatgacagaaaaatcatggaggatttattttctgaaggaaatctgtcagttctcgttg ctaccagtactcttgccatgggtgtgaatttgcctgcccatttagtgattgtgaagtcaactgtacattacaacatggga gtacatgtggcttattctgactcagaaattctacaaatgattggacgggctggaagacctcagtttgatacttctgccac agcagtcatcatgacaaagagccaagacaagttaaagataatttccagcagtgaggagttctgtgaaattcagttgagga ttaatgaaaagaaaactctgaacatgttaaacaatgacaaaaacagacaaacaatcagtttgatacaagcagctttggga tgtttgatggttcaggacttctctctgcaacaggagaccaacaggatattcagagttggtcagagagtcacacggtgttt ggttgaatttttgtggatgagagacaattataaagctgtacttagtgccatacatctgaacaagtgtctgagggccagat tgtgggaagattctaaatatgtcaccaaacagctggaaggaataggacctgctatgtcaaatgcactagtcaatgctgga atagatagctttcaaaagatagaggagaaaaatccaagagaactagaattgattgtgaacaggcatcctccatttggtaa ccagctcagagacagtgtatcatacttacccaagtatgaactaacaatagatcaggtagctaagtatggggaaagctgtt ctgagatcataatcaacatttctatagctaatgcagagaaggtacagcaaggaaaaactacctcagattaccacatgtgt atgctgctcataggagacgaagacaatcacgtagtctttcgcagaaaaatcttggatactcatctcatcaaagatggagg ctttacaaagaaaattgaagtttcaagggcagcaaatggaccagatttgaacattgatttcattagccaagagtgggttg gcattgatgttcagtgtagatatactccaatatatcttggtggaacaaagaggattgctaacactgtgaggaaagaccaa cagtgcagctctgtgaaagggtcaaaccaggttgttctagtcagggaacttgatgaggggagagaggaatgtcaccatag atgtgttaacaaggctatgtgcggacatgaatgctgtaaacatggtattgtaaagaaggcagtccccacaaagtccctgg ttaggactccatctgtcaacagagccaagtttatggacagctacgtctctgacttaaagaacaagatacaacctatgcct gaaacaccacgaatcagcactaaagtaaatactatgagagagaatgtcatagatctaacaaagtttgcatactgccccag cgaaagaatgtcatggcaaataagtgatgaaagacagccaaaaacaacatcagcattagatatgttctattccaacagat tgaaccagaattctgttaacaaatcagaagttagagcccctataactccacataataccaccacaggaaggagtacagac aacagctggataaaactagacttgtttatgagaggaagagataggagtcctgtagaattatctgatgaagaagaaaatgg accaactgtgtacagtgataggtatgaaggccatgactatgaggagaatggttatgaaggagatgatataggagattttg atcttcagtccagtttgttcccaatgaggcagtcaaatcttgaatacagaggtacatcagcacaaaatgtacacagtgat caaactgctgctagagatgccgattgtctgtctgactgggacaatagcttgccaaaattagttagaggaccaaataaaag ccataggtatggtaaagtagtagcatggagtaactcccaggaagctgtaggtgatgaagttacaggggactggagtggta gtgacaatgatcttatcactgcagagcaacaattgtctcagtcttataattctggtacccaggatggacatagtgaacct accataaacacatcagaacatcagtttccacagtcttacaattctagaaccctagaaggacaatgtatacttgtccaaaa cacagcaaaacagccacaggtgaatgtttcaaggtcagagaggcagcaaacaaaaccttcaaatacagacaattcagttc ataagagttctggatttacaaatagttctgacacttttatgactgattacaagtggaataataactgctgtagtaatatc aatggaaacttacagaagcagcagaactatccacaagttcctctcggctccagtgtcaaatcagcaagttctgtttgctc tatgagtgagtcaagaaccaaagacactgcttatatggcttcactctcaaataacagaccagaacatggagattgcaaag gctctctaagttccaagaatacagatgcaccatgtgtctttagcaagaattgtggatttcaagcaaatatagactgttgt catgtcaatgagatagagaaccaggattctttgtataataatgaccatgttgaaccagctgctatgaagcagtcaaacat catgcagtatgggagactggtaaagaagcctgtctacaaggcaaacattaactctccagtatccagtagaagtgtaaaga gagggtcttttacatccttcttcactgactgttttactggagcagatgaggtccctaatgacagtgctgtaggggatgac agattggacacatttgatagcatttttgatggaatattctaa |
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Protein
| Protein ID | pfu_aug2.0_3.1_10061.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3.1_10061.t1 MFSQIPEAPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDC NYPSLEEDVSFGFGSSQISIGNLSQTLDKINSTASDNEALRQTSTPVTQKLCLVKKRQLFHPPLQKIIHQDTKKVKLTDT ANKLDRQNEKALESKTPRKNLGDLHMWETPASDHATNTRGYTPSPLVLQHGIHEGVKLKSVTELPEKYRPVFSFPFFNVV QSKVFDEVFYSDKPVVLCAPTGAGKTVIFELAIIRMIMKLEVTQMQNNYKVVYMAPIKALCRERFVDWQQKFTCYGMICQ ELTGDSDIDDYNQLQDVNMIFTTPEKWDSMTRKWRDNKFLVQSVSLFLVDEIHMLNDSTRGSTIEAVVSRMKTIQQALSR SMSNSPNPQLRFIAVSATIPNIIDVAHWLGDGENPATHFKLDESYRPVVLRKFCSTRKSTQQAAEILVKDSNGMYVRSTD QRQILLTNANMLKDNKLRDLVMKGVGYHHAGLDIHDRKIMEDLFSEGNLSVLVATSTLAMGVNLPAHLVIVKSTVHYNMG VHVAYSDSEILQMIGRAGRPQFDTSATAVIMTKSQDKLKIISSSEEFCEIQLRINEKKTLNMLNNDKNRQTISLIQAALG CLMVQDFSLQQETNRIFRVGQRVTRCLVEFLWMRDNYKAVLSAIHLNKCLRARLWEDSKYVTKQLEGIGPAMSNALVNAG IDSFQKIEEKNPRELELIVNRHPPFGNQLRDSVSYLPKYELTIDQVAKYGESCSEIIINISIANAEKVQQGKTTSDYHMC MLLIGDEDNHVVFRRKILDTHLIKDGGFTKKIEVSRAANGPDLNIDFISQEWVGIDVQCRYTPIYLGGTKRIANTVRKDQ QCSSVKGSNQVVLVRELDEGREECHHRCVNKAMCGHECCKHGIVKKAVPTKSLVRTPSVNRAKFMDSYVSDLKNKIQPMP ETPRISTKVNTMRENVIDLTKFAYCPSERMSWQISDERQPKTTSALDMFYSNRLNQNSVNKSEVRAPITPHNTTTGRSTD NSWIKLDLFMRGRDRSPVELSDEEENGPTVYSDRYEGHDYEENGYEGDDIGDFDLQSSLFPMRQSNLEYRGTSAQNVHSD QTAARDADCLSDWDNSLPKLVRGPNKSHRYGKVVAWSNSQEAVGDEVTGDWSGSDNDLITAEQQLSQSYNSGTQDGHSEP TINTSEHQFPQSYNSRTLEGQCILVQNTAKQPQVNVSRSERQQTKPSNTDNSVHKSSGFTNSSDTFMTDYKWNNNCCSNI NGNLQKQQNYPQVPLGSSVKSASSVCSMSESRTKDTAYMASLSNNRPEHGDCKGSLSSKNTDAPCVFSKNCGFQANIDCC HVNEIENQDSLYNNDHVEPAAMKQSNIMQYGRLVKKPVYKANINSPVSSRSVKRGSFTSFFTDCFTGADEVPNDSAVGDD RLDTFDSIFDGIF |
|