Gene
| Gene Model ID | pfu_aug2.0_300.1_00562 |
|---|---|
| Locus | scaffold300.1 : 13159 ... 25005 : - |
| To GenomeBrowser | scaffold300.1:13159..25005 |
| Genes list of scaffold | scaffold300.1 |
| Synonym | pfu_aug1.0_29881.1_47955 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| replication factor c subunit 2 | GO:0003689 GO:0005524 GO:0005654 GO:0005663 GO:0005794 GO:0006261 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_300.1_00562.t2 | 2 | 1 | DNA_pol3_delta2 | 6 | 24 | 6.0e-11 | 42.2 | 3.6 | 1900.0 | -1.7 |
| pfu_aug2.0_300.1_00562.t2 | 1 | 1 | AAA | 64 | 178 | 1.3e-09 | 38.3 | 8.7e-12 | 4.6e-09 | 36.5 |
| pfu_aug2.0_300.1_00562.t2 | 2 | 2 | DNA_pol3_delta2 | 106 | 182 | 6.0e-11 | 42.2 | 1.1e-12 | 5.6e-10 | 39.1 |
| pfu_aug2.0_300.1_00562.t2 | 1 | 1 | Rep_fac_C | 245 | 332 | 8.8e-25 | 86.5 | 3.9e-27 | 2.1e-24 | 85.3 |
Transcript
| Transcript ID | pfu_aug2.0_300.1_00562.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_300.1_00562.t1 atggaagtggacgaaattacaaacgtaaaacctacaacatctaaaacaagttcaacacatgaatctccttgggttgagaa gttcagacctaccaagctaacagacattgtgggtaacgaggaaaccatcagtaggctgggagtgttcgctcgcgatggaa acgtccctaatgttatcatagctggaccacctggtacagggaagaccaccagtatactaagtttgtgtgtatgtacatat atgtgtattaacaggaaccaccttgtacagggaagacctccagtatactgtctttgtgtaaataagattaagatgtttgc tcagcagaaagtcacgttacctcggggacgacacaaaatcatcatccttgatgaggcagacagtatgactgacggtgctc agcaggctctgaggcgtaccatggagatctattctaaaactacaaggtttgccttggcttgtaacaactcggaaaagata attgagcctatccagtcccggtgtgccgtgcttagatacagtaagctgacagacgtgcaggtactgaagcgattactaga ggtctgtgagctggagaaagtaagctacgtggataacggtctggaggccattatatttacagcacagggagatatgagac aggcattgaataatttacagtccacatttcaaggatttggtcacgtcaacagtgaaaatgtgttcaaggtatgcgacgag ccgcatcctgtacttatacaagacatgcttcagcattgtgtgaatggtaacatagacgaggcgtataaaaccatggccca tctctggagactgggttactctgctgaggatatcatcactatagtgttcagagtgtgtaaaaatcataaaatgccagaat tcttacgacttgagtttataaaggagattggatttacccacatgcggatcgtggaaggtgtaagttctctattacaaatg tcaggacttctggctaggctgtgtaaaataacggcagatccttctacaaactctataccgagtggggaatga |
|
| Transcript ID | pfu_aug2.0_300.1_00562.t2 |
| Definition | - |
>pfu_aug2.0_300.1_00562.t2 atgtctgaacacacgagcatggaagtggacgaaattacaaacgtaaaacctacaacatctaaaacaagttcaacacatga atctccttgggttgagaagttcagacctaccaagctaacagacattgtgggtaacgaggaaaccatcagtaggctgggag tgttcgctcgcgatggaaacgtccctaatgttatcatagctggaccacctggtacagggaagaccaccagtatactaagt ttgtgtgtatgtacatatatgtgtattaacaggaaccaccttgtacagggaagacctccagtatactgtctttgtgtaaa taagattaagatgtttgctcagcagaaagtcacgttacctcggggacgacacaaaatcatcatccttgatgaggcagaca gtatgactgacggtgctcagcaggctctgaggcgtaccatggagatctattctaaaactacaaggtttgccttggcttgt aacaactcggaaaagataattgagcctatccagtcccggtgtgccgtgcttagatacagtaagctgacagacgtgcaggt actgaagcgattactagaggtctgtgagctggagaaagtaagctacgtggataacggtctggaggccattatatttacag cacagggagatatgagacaggcattgaataatttacagtccacatttcaaggatttggtcacgtcaacagtgaaaatgtg ttcaaggtatgcgacgagccgcatcctgtacttatacaagacatgcttcagcattgtgtgaatggtaacatagacgaggc gtataaaaccatggcccatctctggagactgggttactctgctgaggatatcatcactatagtgttcagagtgtgtaaaa atcataaaatgccagaattcttacgacttgagtttataaaggagattggatttacccacatgcggatcgtggaaggtgta agttctctattacaaatgtcaggacttctggctaggctgtgtaaaataacggcagatccttctacaaactctataccgag tggggaatga |
|
Protein
| Protein ID | pfu_aug2.0_300.1_00562.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_300.1_00562.t1 MEVDEITNVKPTTSKTSSTHESPWVEKFRPTKLTDIVGNEETISRLGVFARDGNVPNVIIAGPPGTGKTTSILSLCVCTY MCINRNHLVQGRPPVYCLCVNKIKMFAQQKVTLPRGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNNSEKI IEPIQSRCAVLRYSKLTDVQVLKRLLEVCELEKVSYVDNGLEAIIFTAQGDMRQALNNLQSTFQGFGHVNSENVFKVCDE PHPVLIQDMLQHCVNGNIDEAYKTMAHLWRLGYSAEDIITIVFRVCKNHKMPEFLRLEFIKEIGFTHMRIVEGVSSLLQM SGLLARLCKITADPSTNSIPSGE |
|
| Protein ID | pfu_aug2.0_300.1_00562.t2 |
| Definition | - |
>pfu_aug2.0_300.1_00562.t2 MSEHTSMEVDEITNVKPTTSKTSSTHESPWVEKFRPTKLTDIVGNEETISRLGVFARDGNVPNVIIAGPPGTGKTTSILS LCVCTYMCINRNHLVQGRPPVYCLCVNKIKMFAQQKVTLPRGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALAC NNSEKIIEPIQSRCAVLRYSKLTDVQVLKRLLEVCELEKVSYVDNGLEAIIFTAQGDMRQALNNLQSTFQGFGHVNSENV FKVCDEPHPVLIQDMLQHCVNGNIDEAYKTMAHLWRLGYSAEDIITIVFRVCKNHKMPEFLRLEFIKEIGFTHMRIVEGV SSLLQMSGLLARLCKITADPSTNSIPSGE |
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