Gene
| Gene Model ID | pfu_aug2.0_300.1_00568 |
|---|---|
| Locus | scaffold300.1 : 105546 ... 113644 : + |
| To GenomeBrowser | scaffold300.1:105546..113644 |
| Genes list of scaffold | scaffold300.1 |
| Synonym | pfu_aug1.0_6955.1_38438 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cofilin tropomyosin-type actin-binding protein | GO:0043229 GO:0044763 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_300.1_00568.t1 | 1 | 1 | Cofilin_ADF | 11 | 139 | 1.1e-24 | 86.6 | 9.3e-29 | 1.4e-24 | 86.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_300.1_00568.t1 | gi|291237487|ref|XP_002738655.1| | PREDICTED: cofilin-like [Saccoglossus kowalevskii] | 1.0e-19 |
| pfu_aug2.0_300.1_00568.t1 | gi|684409945|ref|XP_009175913.1| | hypothetical protein T265_11086 [Opisthorchis viverrini] | 2.0e-19 |
| pfu_aug2.0_300.1_00568.t1 | gi|291230460|ref|XP_002735215.1| | PREDICTED: cofilin-like [Saccoglossus kowalevskii] | 2.0e-19 |
| pfu_aug2.0_300.1_00568.t1 | gi|685952104|ref|XP_009269828.1| | Cofilin [Wallemia ichthyophaga EXF-994] | 4.0e-19 |
| pfu_aug2.0_300.1_00568.t1 | gi|50556548|ref|XP_505682.1| | YALI0F20856p [Yarrowia lipolytica] | 7.0e-18 |
Transcript
| Transcript ID | pfu_aug2.0_300.1_00568.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_300.1_00568.t1 atggctatgtcaggagtgaaatgcgatgatgctgtcgtaacagaatatgaagaaatgaaaatgaagaaaaagatcaaatt tcttgtactgtacgtagaggacaataagcttatcaaggtcgaaagagaaaaatttaaagaggaatgcccggacgctgcca ctggctggtgggatacgttcgaggaattcaaggctagccttcctaaagacgaaccacgctatattgtttatgattatcaa ttggacaatggggtagaaaaacttgttcttatgcattggaatccagataatgcaaaagtgaaacctaagatgatttatgc ctcgtcaattgctgttctcaagacgaagctgattggtatatttgcaaatttgagttgttgcgacatggatgaactagaag aaaaacgtttgtctgcagaaatagttaagaaaatgacaaagaaggattaa |
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Protein
| Protein ID | pfu_aug2.0_300.1_00568.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_300.1_00568.t1 MAMSGVKCDDAVVTEYEEMKMKKKIKFLVLYVEDNKLIKVEREKFKEECPDAATGWWDTFEEFKASLPKDEPRYIVYDYQ LDNGVEKLVLMHWNPDNAKVKPKMIYASSIAVLKTKLIGIFANLSCCDMDELEEKRLSAEIVKKMTKKD |
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