Gene
| Gene Model ID | pfu_aug2.0_300.1_00575 |
|---|---|
| Locus | scaffold300.1 : 269909 ... 297947 : + |
| To GenomeBrowser | scaffold300.1:269909..297947 |
| Genes list of scaffold | scaffold300.1 |
| Synonym | pfu_aug1.0_673.1_58199 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_300.1_00575.t1 | 10 | 1 | TSP_1 | 36 | 59 | 0.0 | 202.9 | 1.0 | 15000.0 | -12.5 |
| pfu_aug2.0_300.1_00575.t1 | 10 | 2 | TSP_1 | 63 | 76 | 0.0 | 202.9 | 1.0 | 15000.0 | -5.8 |
| pfu_aug2.0_300.1_00575.t1 | 10 | 3 | TSP_1 | 104 | 112 | 0.0 | 202.9 | 0.35 | 5200.0 | -2.4 |
| pfu_aug2.0_300.1_00575.t1 | 10 | 4 | TSP_1 | 325 | 375 | 0.0 | 202.9 | 4.6e-18 | 6.9e-14 | 51.7 |
| pfu_aug2.0_300.1_00575.t1 | 10 | 5 | TSP_1 | 380 | 429 | 0.0 | 202.9 | 3.6e-11 | 5.3e-07 | 29.6 |
| pfu_aug2.0_300.1_00575.t1 | 10 | 6 | TSP_1 | 436 | 486 | 0.0 | 202.9 | 1.3e-14 | 1.9e-10 | 40.6 |
| pfu_aug2.0_300.1_00575.t1 | 10 | 7 | TSP_1 | 493 | 543 | 0.0 | 202.9 | 5.8e-16 | 8.6e-12 | 44.9 |
| pfu_aug2.0_300.1_00575.t1 | 10 | 8 | TSP_1 | 551 | 600 | 0.0 | 202.9 | 1.0e-15 | 1.5e-11 | 44.1 |
| pfu_aug2.0_300.1_00575.t1 | 10 | 9 | TSP_1 | 606 | 656 | 0.0 | 202.9 | 1.8e-15 | 2.7e-11 | 43.3 |
| pfu_aug2.0_300.1_00575.t1 | 10 | 10 | TSP_1 | 679 | 701 | 0.0 | 202.9 | 7.8e-05 | 1.2 | 9.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_300.1_00575.t1 | gi|260806492|ref|XP_002598118.1| | hypothetical protein BRAFLDRAFT_85664 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_300.1_00575.t1 | gi|260818212|ref|XP_002604277.1| | hypothetical protein BRAFLDRAFT_88566 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_300.1_00575.t1 | gi|625184601|ref|XP_007651328.1| | PREDICTED: hemicentin-1 isoform X1 [Cricetulus griseus] | 0.0 |
| pfu_aug2.0_300.1_00575.t1 | gi|532050133|ref|XP_005367833.1| | PREDICTED: hemicentin-1 [Microtus ochrogaster] | 0.0 |
| pfu_aug2.0_300.1_00575.t1 | gi|403266307|ref|XP_003925331.1| | PREDICTED: hemicentin-1 [Saimiri boliviensis boliviensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_300.1_00575.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_300.1_00575.t1 atgagtttgaatctgttacatgcctttgctctggggcttacaactgtagtactatcacagtgtgagggagggtcgtgtaa caatgactctgactgtgttaatcagataacctgcaaccatcctgcaaacatgaaatgttctaatcataaacattgttact gcgaccaggagcactgtcatacagcaagtgattgtcattctcattcctgtagaaatggacaggtaatgaaatgcggccat ggaacatgcttttgcgatcaagctagatgctccagtgaccatgactgtaatggtgtagtatgtaataaaggacaatggaa gaaatgtaatacaactcaccattcgtgctattgtttaccaggtagtacagacgtaccttcagcaataaaccatactccta gtggaagtgttacctttaaccacggattagagaattgctattctgacaatgactgtcattacataacttgctctgtagga gaatcaaaggcatgctttaacaatcgtgcatgctattgcaagccagatcatacatcaagtaccaatgctgttcagcaaca cattaaagttcagcaaacaacaacatcgaccagtcatccaatcacggtgaaccaccagcagcagacgacaatagaccatc atggctgtgctacggatcatgactgctcctggattaactgtaatggaaagagcaaatgtagcgatcaacacttctgctac tgtgacatcaagtgtaacaacacggtagactgcacatttattcattgtgattcttcacactacagacagtgtacatatgg aggacactgcgtctgtgcacaaggtccagctgcacaatcccagccaccatgtcacgatcatatctgtcctaatggcgagg taccctgggctacaaaagagggagtgtgtacgtgtgtccagagtcatgcatccacctctaatacacatagtacaaaagtg gatggtaaatggtcagtctggtccaaatggaaccattgctctgtaacctgtggtacaggttcaatatcaaggtatcgtgt ttgtaacaacccagtgccaactaatggcggtgctaactgtacgggcagtgatcacgaaacacacgtttgcaataaacacc agtgtcccttatggacggactggcaaggatggagtcattgcacggtgtcttgtggtgtaggtacacagtctaggagtcgt tcatgcatcgatcacaatcatcatcaccacaaacatgactgtatgggtgcacctttagaatcaatgagctgtaacataca ggcgtgttctgtcaatggtggctggtcaaactggactaactggacacaatgttcagtgtcatgtgggtctggcttaatga caagaagtcggtcgtgcgataatcctaaaccagaccatgggggtgcaacatgcattggtaatcatagcgagagtggtgtg tgtaatgcgggagattgccctgtcgatggcgaatggtcgggatggtctacgtggtcccattgtcctgttacatgtggaaa tggcataagaaatcgtgatcgtaaatgtgacaatccgtcaccttctggaggcggtcagaattgcacaggaagtagaagtg aaagtcaggtatgctcgcagtcggcttgtccaattgatggtagctggtcattctggaatacctggacaagttgttctgaa tcatgtgggtttggcgtaagaactcgttatcgtcaatgtgacaatccgccaccatttcatggaggaataccctgctctgg tatctacaatcaaactgaaagctgcaataattctccgtgttccgttgatggtggctggtcggcctggttattcacggcgt gctcagcaacctgtggtgatggaactcggtcacgtgttagactttgtaacaatcctgctccaagcaatggaggattattt tgtaacgggtcagccaatcaaaccgaggcatgtaatgaaagagcatgtgtagtatcgtcatcagcggcaccaactaagtg gataactgttccattcggtgaggncaatcctgctccaagcaatggaggattattttgtaacgggtcagccaatcaaaccg aggcatgtaatgaaagagcatgtgtagtggctaatcaatttgaatgtcaccagtgtggtggtaatgggaccccgtgttcc aaccaggaactgtatgataataatgttagacctagtgcttgtcctgctgacaagggttactgtatgtctgacgtcaccac gagatatggaaacgttagtgttaataaacgggatatggtcattatccatatttgtgatgtatcagtatgtccatcaagac taggttgcagtaccaacagaaaaaagacaagagaacacacagtagaaatacacagtaaaaggatcaaggaacataaaata cttaatccaaagacaactagactaattgacaatcggtaccgacttaggacaaccatcacatcccctgaatcttttatgca ccaaaactag |
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Protein
| Protein ID | pfu_aug2.0_300.1_00575.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_300.1_00575.t1 MSLNLLHAFALGLTTVVLSQCEGGSCNNDSDCVNQITCNHPANMKCSNHKHCYCDQEHCHTASDCHSHSCRNGQVMKCGH GTCFCDQARCSSDHDCNGVVCNKGQWKKCNTTHHSCYCLPGSTDVPSAINHTPSGSVTFNHGLENCYSDNDCHYITCSVG ESKACFNNRACYCKPDHTSSTNAVQQHIKVQQTTTSTSHPITVNHQQQTTIDHHGCATDHDCSWINCNGKSKCSDQHFCY CDIKCNNTVDCTFIHCDSSHYRQCTYGGHCVCAQGPAAQSQPPCHDHICPNGEVPWATKEGVCTCVQSHASTSNTHSTKV DGKWSVWSKWNHCSVTCGTGSISRYRVCNNPVPTNGGANCTGSDHETHVCNKHQCPLWTDWQGWSHCTVSCGVGTQSRSR SCIDHNHHHHKHDCMGAPLESMSCNIQACSVNGGWSNWTNWTQCSVSCGSGLMTRSRSCDNPKPDHGGATCIGNHSESGV CNAGDCPVDGEWSGWSTWSHCPVTCGNGIRNRDRKCDNPSPSGGGQNCTGSRSESQVCSQSACPIDGSWSFWNTWTSCSE SCGFGVRTRYRQCDNPPPFHGGIPCSGIYNQTESCNNSPCSVDGGWSAWLFTACSATCGDGTRSRVRLCNNPAPSNGGLF CNGSANQTEACNERACVVSSSAAPTKWITVPFGEXNPAPSNGGLFCNGSANQTEACNERACVVANQFECHQCGGNGTPCS NQELYDNNVRPSACPADKGYCMSDVTTRYGNVSVNKRDMVIIHICDVSVCPSRLGCSTNRKKTREHTVEIHSKRIKEHKI LNPKTTRLIDNRYRLRTTITSPESFMHQN |
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