Gene
| Gene Model ID | pfu_aug2.0_300.1_00576 |
|---|---|
| Locus | scaffold300.1 : 317769 ... 321007 : + |
| To GenomeBrowser | scaffold300.1:317769..321007 |
| Genes list of scaffold | scaffold300.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| pancreas transcription factor 1 subunit alpha | GO:0003407 GO:0003677 GO:0003700 GO:0005634 GO:0005667 GO:0005737 GO:0009790 GO:0009887 GO:0030902 GO:0031017 GO:0045893 GO:0048384 GO:0048699 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_300.1_00576.t1 | 1 | 1 | HLH | 65 | 116 | 3.1e-18 | 65.1 | 6.7e-22 | 5.0e-18 | 64.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_300.1_00576.t1 | gi|676435446|ref|XP_009047559.1| | hypothetical protein LOTGIDRAFT_66849, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_300.1_00576.t1 | gi|752381772|ref|XP_011225455.1| | PREDICTED: LOW QUALITY PROTEIN: pancreas transcription factor 1 subunit alpha [Ailuropoda melanoleuca] | 0.0 |
| pfu_aug2.0_300.1_00576.t1 | gi|42742524|gb|AAQ74877.2| | pancreas-specific transcription factor 1a [Xenopus laevis] | 0.0 |
| pfu_aug2.0_300.1_00576.t1 | gi|291290921|ref|NP_001167491.1| | pancreas transcription factor 1 subunit alpha [Xenopus laevis] | 0.0 |
| pfu_aug2.0_300.1_00576.t1 | gi|556991549|ref|XP_006000324.1| | PREDICTED: pancreas transcription factor 1 subunit alpha [Latimeria chalumnae] | 5.60519e-45 |
Transcript
| Transcript ID | pfu_aug2.0_300.1_00576.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_300.1_00576.t1 atggattttgataattcagatgaggagaatttttattacgataaagcgtgtcaagattccccattatcctgtgtcagtga cagattctctccccttccctcggaggaaattgtcaatttggagaggaaccagaaaagtgttataaaacatcaaaaacgtc accggaagaatggattacatcatcaaggatttcaaagagaggctgcaaacttgcgggagcgaaaacgcatgcagtcgata aatgaagcgtttgagggacttcgggcccatattccgactttaccgtatgagaaaagactatcaaaggtggatacactgag acttgccatcggctatattgcatttctatctcagctggttcaagcggatattagagccggaaacggaagctgtaataacg gaaacggaaattctaggaaaataataatttattgccattcaagtattttcgctgataagcatgcgtgtggctttccgcca ttagctggccattccttgtcatggacagatgaaaagaaaaccaaatttggccctaataagaagatatttgctaaaatctg gacaccagaagatcccagaggtcactcaagttcacggaaaaaggcgacacctggcacgaatcaagctgattccacagtac tctga |
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Protein
| Protein ID | pfu_aug2.0_300.1_00576.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_300.1_00576.t1 MDFDNSDEENFYYDKACQDSPLSCVSDRFSPLPSEEIVNLERNQKSVIKHQKRHRKNGLHHQGFQREAANLRERKRMQSI NEAFEGLRAHIPTLPYEKRLSKVDTLRLAIGYIAFLSQLVQADIRAGNGSCNNGNGNSRKIIIYCHSSIFADKHACGFPP LAGHSLSWTDEKKTKFGPNKKIFAKIWTPEDPRGHSSSRKKATPGTNQADSTVL |
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