Gene
Gene Model ID | pfu_aug2.0_300.1_00579 |
---|---|
Locus | scaffold300.1 : 357889 ... 365399 : + |
To GenomeBrowser | scaffold300.1:357889..365399 |
Genes list of scaffold | scaffold300.1 |
Synonym | pfu_aug1.0_136409.1_21188 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_300.1_00579.t1 | 1 | 1 | Ifi-6-16 | 36 | 114 | 1.8e-22 | 78.9 | 1.7e-26 | 2.5e-22 | 78.4 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_300.1_00579.t1 | gi|530617428|ref|XP_005298447.1| | PREDICTED: interferon alpha-inducible protein 27-like protein 2A [Chrysemys picta bellii] | 9.0e-18 |
pfu_aug2.0_300.1_00579.t1 | gi|655894370|ref|XP_008249512.1| | PREDICTED: interferon alpha-inducible protein 27-like protein 2A [Oryctolagus cuniculus] | 2.0e-16 |
pfu_aug2.0_300.1_00579.t1 | gi|655894367|ref|XP_008249511.1| | PREDICTED: LOW QUALITY PROTEIN: interferon alpha-inducible protein 27-like protein 2 [Oryctolagus cuniculus] | 1.0e-15 |
pfu_aug2.0_300.1_00579.t1 | gi|589956731|ref|XP_006990973.1| | PREDICTED: LOW QUALITY PROTEIN: interferon alpha-inducible protein 27-like protein 2-like [Peromyscus maniculatus bairdii] | 2.0e-15 |
pfu_aug2.0_300.1_00579.t1 | gi|345324604|ref|XP_001509053.2| | PREDICTED: interferon alpha-inducible protein 27-like protein 2A [Ornithorhynchus anatinus] | 6.0e-15 |
Transcript
Transcript ID | pfu_aug2.0_300.1_00579.t1 |
---|---|
Definition | - |
>pfu_aug2.0_300.1_00579.t1 atgtctttcgtaagcggcaagtatacagccatctttttcgtcctgttgctggtaggtacgccagtgagggcttccgatgg tgatggcttttggacgttcgtgggcgcggttgccgcaggggccggagcagtggtagcggcaccggtagctctaacagtcg ctggattcacgggcgccgggataacggcgggatctgttggagccagtctgatgtccgcgtcagccattgctaacggaggg ggtgtggccgcagggggcgtggtcgccactctacagtccatgggagcggtcggacttggagttggtgccaaagctgccgt gggaaccgctggaggggctgcatatgccgcatggaaaggaagatcatctgatgattaa |
Protein
Protein ID | pfu_aug2.0_300.1_00579.t1 |
---|---|
Definition | - |
>pfu_aug2.0_300.1_00579.t1 MSFVSGKYTAIFFVLLLVGTPVRASDGDGFWTFVGAVAAGAGAVVAAPVALTVAGFTGAGITAGSVGASLMSASAIANGG GVAAGGVVATLQSMGAVGLGVGAKAAVGTAGGAAYAAWKGRSSDD |