Gene
| Gene Model ID | pfu_aug2.0_301.1_03961 |
|---|---|
| Locus | scaffold301.1 : 1 ... 36865 : - |
| To GenomeBrowser | scaffold301.1:1..36865 |
| Genes list of scaffold | scaffold301.1 |
| Synonym | pfu_aug1.0_18533.1_18549 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_301.1_03961.t1 | 5 | 1 | Choline_transpo | 196 | 237 | 0.0 | 196.7 | 0.0067 | 25.0 | 3.4 |
| pfu_aug2.0_301.1_03961.t1 | 5 | 2 | Choline_transpo | 372 | 415 | 0.0 | 196.7 | 0.008 | 30.0 | 3.2 |
| pfu_aug2.0_301.1_03961.t1 | 5 | 3 | Choline_transpo | 431 | 511 | 0.0 | 196.7 | 7.3e-16 | 2.7e-12 | 46.0 |
| pfu_aug2.0_301.1_03961.t1 | 5 | 4 | Choline_transpo | 666 | 805 | 0.0 | 196.7 | 0.0 | 1.69557e-43 | 148.6 |
| pfu_aug2.0_301.1_03961.t1 | 5 | 5 | Choline_transpo | 799 | 828 | 0.0 | 196.7 | 1.8e-06 | 0.0066 | 15.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_301.1_03961.t1 | gi|676433309|ref|XP_009046858.1| | hypothetical protein LOTGIDRAFT_237969 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_301.1_03961.t1 | gi|260789815|ref|XP_002589940.1| | hypothetical protein BRAFLDRAFT_127837 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_301.1_03961.t1 | gi|585654708|ref|XP_006815345.1| | PREDICTED: choline transporter-like protein 1-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_301.1_03961.t1 | gi|390359408|ref|XP_788315.3| | 1.4013e-45 |
Transcript
| Transcript ID | pfu_aug2.0_301.1_03961.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_301.1_03961.t1 atggataatgatgtaaggtctttagaagcctacctgggcctctggttaggagatccacacagacttgtgtatggtgtgga tagctggggaaacgtgtgtggaagaaaaagtaacaaacaatataataatgtacccttgtctggaagagacctctctaatg aaattaacctcttttacttcgacaaagatatattcgttgactacaaacctggatctttcatacatccgtccaagacggcc gtctgcgtcaaatcttgtccaaacacagtcatttccacatcagaggctctgcgtaatttttcaagtacgtccggctccaa attatgccgttatgacgtatcactgaatcagtacaccggaggaagttcggatgccctcggagaatgtccacccttgccaa ttgaagaacaatcatcaatactttatagatgtttaccaaaatccctcagctctcctttggagctattgactggtgcaata gatagtttattcaataaaatagatgaaaatttctcgaagaaatgcctatcagacctggagtcaacgtggaaagaaatatg ttatctcagtgctctagcagttggtgtatccttggtgatagttattttactgagatttatagcggctatagtgatttggc tgatggtcgccgtgttagccgtgggaagtgtggccgcaaccgttgtttgctgtaacctcttttacttcgacaaagatata ttcgttgattacaaacctggatctttcatacatccgtccaagacggccgtctgtgtcaaatcttgtccaaacacagtcat ttccacatcagaggctctacgtaatttttcaagtacgtctggctccaaattatgccgttatgacgtatcactgaatcagt acaccggaggaagttcggatgccctcggagaatgtccacccttgccaattgaagaacaatcatcaatactttatagatgt ttaccaaaatccctcagctctcctttggagctattgactggtgcaatagatagtttattcaataaaatagatgaaaattt ctcgaagaaatgcctgtcagacctggagtccacgtggaaagaaatatgttatctcagtgctttagcagttggtgtatcct tggtgatagttattttactgagatttatagcggctatagtaatttggctgatggtggcagtgttagccgtgggaagtgtg gccgcaaccgttgtttgctggctcaaatatatagatttcagacaggacaatctcagtgatccacagaatgaagaaaattg gttgattggctctatagtagccactgttgttatgattctcattttgttacttcttctcatcatgagaaaaagaataggac tggttgttcagctgtttaaggaagcagggaaggccgtcgctagcatgccgcttttacttcttcaaccaatttggacagta ctgatcgttttcctggtacttgctggcgctggttatacatttttgggtatggaatcagcaggccaccctgtaatttcaaa cacaaccggatttgtttcatttgataaagacgaatctgtcaaatacccaacttgtcatggtcacagaaaaacagaattta ccacaacctggacatctcggtcctcctggtcctctttggctaggtggaacagggactctttgaactgtgttctttggaat ggtagtacttggggtccaattggtccttccgagggtagttctttggtccgcactgccgaaactgatgctcatagcgctgc cacggacgactccagcttggtcgagagtttgttctccaacgactggaccacaataaccatcatggcttccattgactttg cgagatcgtccaatggacgcgtcgtcattctggatatcttttcggctgttttttccacatcccggagatcatctagagta cggggcttgtctctaaaaacggaggctgccaggtatgccctgaggaagcgcatcgccaaagatacctttacgtcttcgga tagaaatgtgaacatcttggactttcctgtaataaaatccactggccgattgataagatatcatcttggatctgcggctt ttgggtcttttatcattgcgctggtttcctttataaatatgattttgacatttattcacaacagattaaagaacagaagc ggggaatgcatctcctttttaaccaagtgtctgtgctgctgcttttggtgctttgagaaattcatcaaatttttaaactc aaatgcctacatagaaatagctatattaggatgtggattttgcaaggctgcacgccaggcctttctcattatagttggta acgccatggacctggcggccataaattctattggtgatttcacgttgtttcttggtaaagcgggtactgtctctgtagta gctgttgttggcattgaacttatggcgctttgcatcgacactatatttatatgtttctgtgaggactgtgatagaaataa cgggtctgacaggccatacgccatgagtattggtctaatgttaatcagtctcaaagtcgagaaggcaaggccaaatcgtg agaattccaatcggaacggttgcgaaccccggaatgaacaacattcccaagtgagaccaggtgcccggagagagtcagca tctcctgattgcatgcaacacccgtcggaacagctccatggaaacctgccaaatcctgtgattgtctcgatgtacatttt gatgtacagattgg |
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Protein
| Protein ID | pfu_aug2.0_301.1_03961.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_301.1_03961.t1 MDNDVRSLEAYLGLWLGDPHRLVYGVDSWGNVCGRKSNKQYNNVPLSGRDLSNEINLFYFDKDIFVDYKPGSFIHPSKTA VCVKSCPNTVISTSEALRNFSSTSGSKLCRYDVSLNQYTGGSSDALGECPPLPIEEQSSILYRCLPKSLSSPLELLTGAI DSLFNKIDENFSKKCLSDLESTWKEICYLSALAVGVSLVIVILLRFIAAIVIWLMVAVLAVGSVAATVVCCNLFYFDKDI FVDYKPGSFIHPSKTAVCVKSCPNTVISTSEALRNFSSTSGSKLCRYDVSLNQYTGGSSDALGECPPLPIEEQSSILYRC LPKSLSSPLELLTGAIDSLFNKIDENFSKKCLSDLESTWKEICYLSALAVGVSLVIVILLRFIAAIVIWLMVAVLAVGSV AATVVCWLKYIDFRQDNLSDPQNEENWLIGSIVATVVMILILLLLLIMRKRIGLVVQLFKEAGKAVASMPLLLLQPIWTV LIVFLVLAGAGYTFLGMESAGHPVISNTTGFVSFDKDESVKYPTCHGHRKTEFTTTWTSRSSWSSLARWNRDSLNCVLWN GSTWGPIGPSEGSSLVRTAETDAHSAATDDSSLVESLFSNDWTTITIMASIDFARSSNGRVVILDIFSAVFSTSRRSSRV RGLSLKTEAARYALRKRIAKDTFTSSDRNVNILDFPVIKSTGRLIRYHLGSAAFGSFIIALVSFINMILTFIHNRLKNRS GECISFLTKCLCCCFWCFEKFIKFLNSNAYIEIAILGCGFCKAARQAFLIIVGNAMDLAAINSIGDFTLFLGKAGTVSVV AVVGIELMALCIDTIFICFCEDCDRNNGSDRPYAMSIGLMLISLKVEKARPNRENSNRNGCEPRNEQHSQVRPGARRESA SPDCMQHPSEQLHGNLPNPVIVSMYILMYRL |
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