Gene
| Gene Model ID | pfu_aug2.0_302.1_07330 |
|---|---|
| Locus | scaffold302.1 : 322606 ... 336357 : + |
| To GenomeBrowser | scaffold302.1:322606..336357 |
| Genes list of scaffold | scaffold302.1 |
| Synonym | pfu_aug1.0_5059.1_59690 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna repair protein rad51 homolog 4 | GO:0003677 GO:0006259 GO:0043232 GO:0044446 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_302.1_07330.t1 | 1 | 1 | Rad51 | 84 | 259 | 8.7e-26 | 90.3 | 4.4e-29 | 1.1e-25 | 90.0 |
| pfu_aug2.0_302.1_07330.t1 | 1 | 1 | AAA_25 | 85 | 250 | 3.2e-11 | 43.0 | 1.8e-14 | 4.4e-11 | 42.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_302.1_07330.t1 | gi|530646520|ref|XP_005309892.1| | PREDICTED: DNA repair protein RAD51 homolog 4 [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_302.1_07330.t1 | gi|591385498|ref|XP_007067196.1| | PREDICTED: DNA repair protein RAD51 homolog 4 [Chelonia mydas] | 0.0 |
| pfu_aug2.0_302.1_07330.t1 | gi|532084170|ref|XP_005327816.1| | PREDICTED: DNA repair protein RAD51 homolog 4 isoform X1 [Ictidomys tridecemlineatus] | 0.0 |
| pfu_aug2.0_302.1_07330.t1 | gi|686585980|ref|XP_009285288.1| | PREDICTED: DNA repair protein RAD51 homolog 4 [Aptenodytes forsteri] | 0.0 |
| pfu_aug2.0_302.1_07330.t1 | gi|690447852|ref|XP_009324339.1| | PREDICTED: DNA repair protein RAD51 homolog 4 [Pygoscelis adeliae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_302.1_07330.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_302.1_07330.t1 atgccaaaagagggagaaagagggagattgggccaaaaagagggagattttggcctccctcgagggagaaatgccaaaga gggagatgaggtcaaaaagagggagtctccctcaaaaagagggaaagttgacaggtatgcattactaagctactgtccag ttgctgttagacggattttactggctcagcattcagccttcccctctaatggattagagctgtttgagagtgctatagca tcatcttcaatactttcaactggttcatcaagcttggacaaacttctagatgggggattgtacacatctgaagtgacaga agttgctggggaaatagcagctggcaaaactcagctatgtttaacggcagcagttagtgcctgtggggattccagacaga gcgtattatatatagatacttgtgggggctttgttgccgaaagactagctgaaatagcggaaaatagatatggaactcag tttgcagagaagatgttacagtccattcattgcctacagatatttgatatttattcgctaatggaagctttagaggatgt cagaatggccatcgtcaaaaagactgactgtttctacagaaacctaaggttgttgatagttgacagtgtggcctctgtga tatatcccgtcctaggtggacagcaaaccgatggtcatgcactgatggttcacttagcattgaagttaaagcaacttgca tctgaattttctatggctgtactggttacaaacaatgtatatggacaaggaaaggcacagcaagggtaa |
|
Protein
| Protein ID | pfu_aug2.0_302.1_07330.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_302.1_07330.t1 MPKEGERGRLGQKEGDFGLPRGRNAKEGDEVKKRESPSKRGKVDRYALLSYCPVAVRRILLAQHSAFPSNGLELFESAIA SSSILSTGSSSLDKLLDGGLYTSEVTEVAGEIAAGKTQLCLTAAVSACGDSRQSVLYIDTCGGFVAERLAEIAENRYGTQ FAEKMLQSIHCLQIFDIYSLMEALEDVRMAIVKKTDCFYRNLRLLIVDSVASVIYPVLGGQQTDGHALMVHLALKLKQLA SEFSMAVLVTNNVYGQGKAQQG |
|