Gene
| Gene Model ID | pfu_aug2.0_303.1_10581 |
|---|---|
| Locus | scaffold303.1 : 32566 ... 52303 : + |
| To GenomeBrowser | scaffold303.1:32566..52303 |
| Genes list of scaffold | scaffold303.1 |
| Synonym | pfu_aug1.0_4761.1_37962 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| probable atp-dependent rna helicase ddx58 | GO:0097159 GO:1901363 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_303.1_10581.t1 | 2 | 1 | CARD | 64 | 119 | 9.6e-08 | 31.7 | 0.91 | 1000.0 | -0.4 |
| pfu_aug2.0_303.1_10581.t1 | 2 | 2 | CARD | 146 | 221 | 9.6e-08 | 31.7 | 1.3e-09 | 1.5e-06 | 27.9 |
| pfu_aug2.0_303.1_10581.t1 | 2 | 1 | ResIII | 378 | 524 | 1.1e-19 | 71.0 | 9.2e-23 | 1.1e-19 | 71.0 |
| pfu_aug2.0_303.1_10581.t1 | 2 | 1 | DEAD | 382 | 551 | 1.1e-22 | 80.3 | 1.3e-24 | 1.5e-21 | 76.6 |
| pfu_aug2.0_303.1_10581.t1 | 2 | 1 | Helicase_C | 450 | 490 | 6.9e-17 | 61.0 | 0.01 | 11.0 | 5.9 |
| pfu_aug2.0_303.1_10581.t1 | 2 | 2 | DEAD | 733 | 831 | 1.1e-22 | 80.3 | 0.034 | 39.0 | 3.7 |
| pfu_aug2.0_303.1_10581.t1 | 2 | 2 | Helicase_C | 805 | 867 | 6.9e-17 | 61.0 | 3.1e-17 | 3.5e-14 | 52.4 |
| pfu_aug2.0_303.1_10581.t1 | 2 | 2 | ResIII | 900 | 930 | 1.1e-19 | 71.0 | 1.7 | 2000.0 | -1.6 |
| pfu_aug2.0_303.1_10581.t1 | 1 | 1 | RIG-I_C-RD | 946 | 1065 | 5.3e-24 | 84.4 | 2.5e-26 | 2.9e-23 | 82.0 |
Transcript
| Transcript ID | pfu_aug2.0_303.1_10581.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_303.1_10581.t1 atgtcgcacataagtttagactcggcaccaaccctcagtatatcatccctccgttcacaggattctttacgtgagcctga gagtctgaagctgtccctgaaatgtgagggtacccctaaacagatcttgctgttcaaagacctcattatcacaggtgtta atggatgtcatcttctaccattactagccgacattatcgagagagaggacagattaaaaataaaacgtatccatgacaaa gttggaccaaagaaagcaacaatgttccttataaaggtacttgaaaagaaggattttcctggtaaatgggagagatttgt tcttgccttagaaaaagcagattatgaatttgttgcaaaagctttgcgtggggaggaaatacttaaacaagtgtatgatg aacaattcaagctattagaactgtttgcagatgatttaataaaaacgttaaagccatcagatattgtaccacatttatca caaaggaagataataaatgagaacgatagacaggaaataatggcagaggaacagaatcatggacccatagctggcatgat tgtactgtttgatcgacttggtcattataaaaatccaaactggtacaatgagtttctagatgtactgtgtgagacagact ataaacagctggtggatattatagatgaagatcacatttataaaacaggaggtgcacagccatcaatgaataacctgagt gcccctccaccccctcctgatgaaattgaccaaaccgtaggagctcttatcaaagatctggaaataagtgatcaaggaga cgatgagataacgcaactaaagcaggtagcccagagtgaggctcggtccatcaacatggccggtgtgggagcgatcaaag agattgcacagaagtacttacacatggggaggggtaaaatgatacagggactgaccgacgatgacaaggagatcagtatg agctctctagataaggacaaggtgctgcagagtttggacagagaagtcgaatctaccgctcatgtaccaaacattgttgg ggatgcaccactgaggacagattctgtgtatgacaacaatgtcaataatgaggacgatgatgatgaagcaccaaaggtag atcctgagccattagaacttaggaaatatcaacaagaactggctgaaccggcactgcagggaaagaactgtattatagtg gctccaacagggagtggtaaaacacatgtagccatgaaaatcatacaggaccatcgtgaaaagatccgtagaatacgcat acccaaggttatcttccttgtggagcaaagtgctctggctgagcaacaagccaaacagtgcattaaatatctgggatgta aagtcaagctcatcacgggagaaacacaaaggaatgaaaatatgaaaaccttgtctcattggttaaatacgaaagacatt ctggtggtgacggcacagatattggtgaatgctttggcagagaaagaagtgcagatacagaacttttccttgatggtatt tgatgagtgtcaccatgcacatgctaaacattcctacaacaagataatgttccattacatggatttaaagctggctccag gaaatcttatccctgttctaccacagatagtgggtcttacagcatcagtaggtgtaggaaaggctaagacattggggact gctgttaattggatcaaatccatgatggcaaatatggacgctgaggaactatctacagtggtaaaacacagggtagaatt ggcagagtatgtcaacattccacaacaagttgtcaaattatctcgaagaagaacaaaagaccattttggagaggttgttg gcaaaatcatggattcaatagtacgctacatgaaaaattctcaatatcatgagatgttgccagcctcagtgtatgatgtt cccgttagtaagggtagtccacagtttacacagtgggtcagcacgctatggagagaacaggcaaaaattcatgatcagac tgctaggaagttcttccatacttgtcgtcaatatctagatatgtacaacagagccctgatcgtgtataatgatgccagag cctccgactcgctgacgtttatagaaggagaactgaagaaatgggaggaaaccaccataccagattctacagacgagaaa atgagaacactgtttaacaaaagtagaacaatacttcaacattgctcagaagataagggtcatgacaatcccaagctgga ggaactgaggaacatgatacttagtgcttacagagataaacctgattcccgcggcattgtgttcgtaaaaacaagggagc taaccaaggcgatagaagcctggatgcaggagacgagtggactgaaggaacttaaacctgtacagtttgttggtgctcag gcctctaaagacactgggggaatgacaaaagtggcccaagacaaagcattgtcattgtttagagatggaggccataaaat aatcatagctacgtctgttgctgaggaagggctggacatacagaagtgcaacttggtggtacgctatgatcatgtgacca atgaaatagccatggtgcagtcaagagggagaggtagagccgaggacagtaagtatgtggttgtagccgaggataatagc ggaactgccgagaaggaagagctgaaccaacttagagaggtcatgatgaatgatgccatcaaacaactaagggagcagtt cagaaaggacaaaggtaaattcgtacaagatatagagaagaaacagaaggaagctaaggcagaacgtgaccttgccgcag caaatcaacatggcagggtcgtcaatcaaggagaatacgtcctacgctgtgtgaaatgtagcaactatatctgtatggcc tccgatgtgaagaaaatccagaatgcccaccatgctgttctctcaccagacatcagagagagggtacaagccaggaaaat tcctatcccgacctttcaagatgagaacctaacatgtggagctgggaaactgctgtgcaaggaatgtggaagcaatcttg gtaatgtctccatctacaagcaggcccagttccctatactgaagatagagtacttggtaatagaggacagtgtgggtaac agggacgtgaagaagaagtggaaaagcgtaccattcttagttcctgaactatcatcagaggacctactacagcagtcaaa acatgagaagctgatctga |
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Protein
| Protein ID | pfu_aug2.0_303.1_10581.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_303.1_10581.t1 MSHISLDSAPTLSISSLRSQDSLREPESLKLSLKCEGTPKQILLFKDLIITGVNGCHLLPLLADIIEREDRLKIKRIHDK VGPKKATMFLIKVLEKKDFPGKWERFVLALEKADYEFVAKALRGEEILKQVYDEQFKLLELFADDLIKTLKPSDIVPHLS QRKIINENDRQEIMAEEQNHGPIAGMIVLFDRLGHYKNPNWYNEFLDVLCETDYKQLVDIIDEDHIYKTGGAQPSMNNLS APPPPPDEIDQTVGALIKDLEISDQGDDEITQLKQVAQSEARSINMAGVGAIKEIAQKYLHMGRGKMIQGLTDDDKEISM SSLDKDKVLQSLDREVESTAHVPNIVGDAPLRTDSVYDNNVNNEDDDDEAPKVDPEPLELRKYQQELAEPALQGKNCIIV APTGSGKTHVAMKIIQDHREKIRRIRIPKVIFLVEQSALAEQQAKQCIKYLGCKVKLITGETQRNENMKTLSHWLNTKDI LVVTAQILVNALAEKEVQIQNFSLMVFDECHHAHAKHSYNKIMFHYMDLKLAPGNLIPVLPQIVGLTASVGVGKAKTLGT AVNWIKSMMANMDAEELSTVVKHRVELAEYVNIPQQVVKLSRRRTKDHFGEVVGKIMDSIVRYMKNSQYHEMLPASVYDV PVSKGSPQFTQWVSTLWREQAKIHDQTARKFFHTCRQYLDMYNRALIVYNDARASDSLTFIEGELKKWEETTIPDSTDEK MRTLFNKSRTILQHCSEDKGHDNPKLEELRNMILSAYRDKPDSRGIVFVKTRELTKAIEAWMQETSGLKELKPVQFVGAQ ASKDTGGMTKVAQDKALSLFRDGGHKIIIATSVAEEGLDIQKCNLVVRYDHVTNEIAMVQSRGRGRAEDSKYVVVAEDNS GTAEKEELNQLREVMMNDAIKQLREQFRKDKGKFVQDIEKKQKEAKAERDLAAANQHGRVVNQGEYVLRCVKCSNYICMA SDVKKIQNAHHAVLSPDIRERVQARKIPIPTFQDENLTCGAGKLLCKECGSNLGNVSIYKQAQFPILKIEYLVIEDSVGN RDVKKKWKSVPFLVPELSSEDLLQQSKHEKLI |
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