Gene
| Gene Model ID | pfu_aug2.0_3042.1_09048 |
|---|---|
| Locus | scaffold3042.1 : 28316 ... 47905 : + |
| To GenomeBrowser | scaffold3042.1:28316..47905 |
| Genes list of scaffold | scaffold3042.1 |
| Synonym | pfu_aug1.0_2718.1_23059 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| structural maintenance of chromosomes protein 6 | GO:0005634 GO:0006281 GO:0006310 GO:0044427 GO:0051276 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3042.1_09048.t1 | 1 | 1 | SMC_N | 49 | 341 | 4.3e-11 | 42.4 | 4.9e-13 | 2.5e-10 | 39.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3042.1_09048.t1 | gi|676430688|ref|XP_009046008.1| | hypothetical protein LOTGIDRAFT_137608, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_3042.1_09048.t1 | gi|556982666|ref|XP_005997583.1| | PREDICTED: structural maintenance of chromosomes protein 6 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_3042.1_09048.t1 | gi|470639885|ref|XP_004324991.1| | PREDICTED: structural maintenance of chromosomes protein 6-like [Tursiops truncatus] | 0.0 |
| pfu_aug2.0_3042.1_09048.t1 | gi|28316404|dbj|BAC56937.1| | structural maintenance of chromosomes protein 6 [Xenopus laevis] | 0.0 |
| pfu_aug2.0_3042.1_09048.t1 | gi|584004233|ref|XP_006797121.1| | PREDICTED: structural maintenance of chromosomes protein 6-like isoform X2 [Neolamprologus brichardi] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3042.1_09048.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3042.1_09048.t1 atgaaaatcaatgaaaagatcagagagctcaagaatgaaatctacgaactgaaaagcattgaagacccagtaccagtcga tgttagcacattggaagaagaggtagacaatttaacagagcagatcagcaagatagaaatattacatggggaaaaatcgg ctaagtacagtgaagtggaaaatataatgaaagagtccgataaacggttcaaggatgtagagcaagccatgagacagaag gcagaagtgggagaacctcttaaggatgatttaggaagagtccagttggagatcgaacaagccaagtcacacaaaaaaca ttatgaacagacactgaaggaacaagaaaagaaagtaggagaactcaagaagaaaatggaaaattatggaaaagaaattg agagtgacacagagaaagccaaaaagattaagccagatcgtataaatacaaggcgctcggtgcaaaacttggaaagtgag atctgccagattgagaaacaaatcaaaactgaagaaaagagtcgtggtgatccagaggagataacaagaaagtaccatga tcaaaaggaagcctacttgggaattcaaagggaggttggacaatgcaatacttttctctctcaccttcagcgggttatgg ttcatcgccagcagcaatattcagagctccggagactgatcgcaatgagagccaagtatttcttcattgttttgctggca aatcggaattataccggcaagatgaaatttaatcacttaaaagagactttagaaatgtctgtacaacctcacgttaccca ggaggagggagctaaggacctgaggtctctgtccggaggggagaggtcgttctccaccgtctgttttattctgtccctct gggacgccatggaagctccgttcagatgccttgacgaatttgatgtgttcatggacatggtcaatagaagaatatctatg gatatgatgctgaaagttgccgagaatcaaccacaacgacagtttatctttctcactccacaaaacatgagccaacttgg aatacatactgcatccttgaatattttccgaatgcctgatccggatagaggctctggtgttctgccatttagacgatcaa caaatcagagtcaagatgaagaagatgaataa |
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Protein
| Protein ID | pfu_aug2.0_3042.1_09048.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3042.1_09048.t1 MKINEKIRELKNEIYELKSIEDPVPVDVSTLEEEVDNLTEQISKIEILHGEKSAKYSEVENIMKESDKRFKDVEQAMRQK AEVGEPLKDDLGRVQLEIEQAKSHKKHYEQTLKEQEKKVGELKKKMENYGKEIESDTEKAKKIKPDRINTRRSVQNLESE ICQIEKQIKTEEKSRGDPEEITRKYHDQKEAYLGIQREVGQCNTFLSHLQRVMVHRQQQYSELRRLIAMRAKYFFIVLLA NRNYTGKMKFNHLKETLEMSVQPHVTQEEGAKDLRSLSGGERSFSTVCFILSLWDAMEAPFRCLDEFDVFMDMVNRRISM DMMLKVAENQPQRQFIFLTPQNMSQLGIHTASLNIFRMPDPDRGSGVLPFRRSTNQSQDEEDE |
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