Gene
| Gene Model ID | pfu_aug2.0_3045.1_19010 |
|---|---|
| Locus | scaffold3045.1 : 15542 ... 31745 : - |
| To GenomeBrowser | scaffold3045.1:15542..31745 |
| Genes list of scaffold | scaffold3045.1 |
| Synonym | pfu_aug1.0_16022.1_68923 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| adp-ribosylation factor-binding protein gga1 isoform x1 | GO:0005622 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3045.1_19010.t1 | 2 | 1 | VHS | 2 | 122 | 5.4e-38 | 129.8 | 2.09999e-41 | 1.1e-37 | 128.8 |
| pfu_aug2.0_3045.1_19010.t1 | 2 | 1 | GAT | 137 | 232 | 4.4e-23 | 81.1 | 8.9e-27 | 4.4e-23 | 81.1 |
| pfu_aug2.0_3045.1_19010.t1 | 2 | 2 | VHS | 157 | 184 | 5.4e-38 | 129.8 | 0.3 | 1500.0 | -1.3 |
| pfu_aug2.0_3045.1_19010.t1 | 2 | 2 | GAT | 382 | 382 | 4.4e-23 | 81.1 | 1.1 | 5400.0 | -2.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3045.1_19010.t1 | gi|676428827|ref|XP_009045401.1| | hypothetical protein LOTGIDRAFT_230220 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_3045.1_19010.t1 | gi|524870306|ref|XP_005091938.1| | PREDICTED: ADP-ribosylation factor-binding protein GGA1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_3045.1_19010.t1 | gi|585709858|ref|XP_006824429.1| | PREDICTED: ADP-ribosylation factor-binding protein GGA3-like isoform X2 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_3045.1_19010.t1 | gi|585709854|ref|XP_006824428.1| | PREDICTED: ADP-ribosylation factor-binding protein GGA3-like isoform X1 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_3045.1_19010.t1 | gi|602632791|ref|XP_007423283.1| | PREDICTED: ADP-ribosylation factor-binding protein GGA1 isoform X1 [Python bivittatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3045.1_19010.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3045.1_19010.t1 atgagagatgtggattgggaatatataacaaatttttgtgatcaagtaaataaagaattagaaggaccacagattgctgt acgattaatagcccataaagtccagtctccacaggaaagggaggctctctatgctttgacgactttggaatcctgtgtaa aaaattgtggaagacgtttccatcaagagattggaaagtttaaattcctgaatgaactgataaaagtagtttcaccaaag taccttggagcaagaactacagacaaagttaagaagcgatgtatagaacttatgtacagctggagcaaaggtctgcaaca tgagacaaaggtagcagaggcatataaaatgttaaaaacacagggcattgttaaagaggacccagttcatgttgatcagg atgcagataaaatggaaaaagtatctcgcaggataaatgaattagaaactataaacaataatgtgaaattactcagtgaa atgctccaacattatgattcttcatcttcttcgggggaaaaagatatgatgaaggagctatatgactctttagagaagct acgtcctaatttattcaggcttgctagtgatgcagacgaaaaagataatgatgcaatcactgatattttgaagagtaatg atgaagtcatgagagttatggcattgtacaagaaacaagttgagggtataacggaagaaaatggtgtatcttcaccttca gatgttgaaagatgcaaacatatttatgtattcctggtcaaagacattgctaagcaagacaacatactagtatcatctgg tatatctcagccacctcagaatgttcccacaccaatgtttcccatgggaggaggacaacctacattccaggccatgaatc agccaatcagaggtcccgtaccaaattactcattacctcagagtctatcacagggctttactcctgtaatgactcaagta ccacagggcaccatgccagccatgggatcaatgcaaggttttactggactcacatctcagaccgagcccaaacagcctcc gacagaacaacaacagaaagcattagatgatctagatctgctaggacagaacctgatgcaacaaagtctacccaaagaca gtaaaataaaaacacaagataccggacaacagcagaagaagacattgaatcaaatggttaatacgccgtcgttatctcag aatgtgttatcgtctgttcagccttccccgtttgatgctgcacttgcagagaagatccgattgaagttcaaaatcaccta ctcaatgaacgatgagaactgttcggacattggagaaatagagtcagcacctttgtga |
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Protein
| Protein ID | pfu_aug2.0_3045.1_19010.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3045.1_19010.t1 MRDVDWEYITNFCDQVNKELEGPQIAVRLIAHKVQSPQEREALYALTTLESCVKNCGRRFHQEIGKFKFLNELIKVVSPK YLGARTTDKVKKRCIELMYSWSKGLQHETKVAEAYKMLKTQGIVKEDPVHVDQDADKMEKVSRRINELETINNNVKLLSE MLQHYDSSSSSGEKDMMKELYDSLEKLRPNLFRLASDADEKDNDAITDILKSNDEVMRVMALYKKQVEGITEENGVSSPS DVERCKHIYVFLVKDIAKQDNILVSSGISQPPQNVPTPMFPMGGGQPTFQAMNQPIRGPVPNYSLPQSLSQGFTPVMTQV PQGTMPAMGSMQGFTGLTSQTEPKQPPTEQQQKALDDLDLLGQNLMQQSLPKDSKIKTQDTGQQQKKTLNQMVNTPSLSQ NVLSSVQPSPFDAALAEKIRLKFKITYSMNDENCSDIGEIESAPL |
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