Gene
| Gene Model ID | pfu_aug2.0_3060.1_02320 |
|---|---|
| Locus | scaffold3060.1 : 21448 ... 29955 : - |
| To GenomeBrowser | scaffold3060.1:21448..29955 |
| Genes list of scaffold | scaffold3060.1 |
| Synonym | pfu_aug1.0_33202.1_48108 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| pancreatic alpha-amylase-like | GO:0004556 GO:0005975 GO:0043169 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3060.1_02320.t1 | 1 | 1 | Alpha-amylase | 43 | 225 | 4.3e-12 | 46.0 | 1.3e-15 | 6.5e-12 | 45.4 |
| pfu_aug2.0_3060.1_02320.t1 | 2 | 1 | Alpha-amylase_C | 305 | 363 | 7.6e-26 | 90.1 | 1.5e-14 | 7.6e-11 | 42.0 |
| pfu_aug2.0_3060.1_02320.t1 | 2 | 2 | Alpha-amylase_C | 389 | 471 | 7.6e-26 | 90.1 | 1.3e-16 | 6.4e-13 | 48.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3060.1_02320.t1 | gi|611434974|ref|NP_998176.2| | amylase-3 protein precursor [Danio rerio] | 0.0 |
| pfu_aug2.0_3060.1_02320.t1 | gi|1915885|emb|CAA69658.1| | alpha-amylase [Crassostrea gigas] | 0.0 |
| pfu_aug2.0_3060.1_02320.t1 | gi|185858716|gb|ACC77976.1| | alpha amylase, partial [Crassostrea gigas] | 0.0 |
| pfu_aug2.0_3060.1_02320.t1 | gi|185858679|gb|ACC77975.1| | alpha amylase, partial [Crassostrea gigas] | 0.0 |
| pfu_aug2.0_3060.1_02320.t1 | gi|558147285|ref|XP_006119858.1| | PREDICTED: pancreatic alpha-amylase-like [Pelodiscus sinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3060.1_02320.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3060.1_02320.t1 atgactggcgggggaagtggatcaggaaccggaggcagccgttacgatggcgggagtctatcttaccctggtgtgccatt ttcatcgtgggatttcaacgcagggtccgagtgtcactccggagatggcgatattcataactacaacgaccctaacgaag tgcgcaactgtcgcctggtcagcttaagggatctcaaaatgtcaaaagattacgtcagagacaaagttgcagactacatg aacaatttgataaacattggtgtcgccggcttccgtgtagacgcagcaaaacacatgtggcccggagatctgagagcggt cttcggaaagcttcacaatttgaatacaaaatacttcaatagtggtcaaaagccgttcatattccaagaagtaatagaca tgggtggagaggcaatcaaagcagctgagtatacaccaatcgctagagttacaaatttcatatacggcataaagatagca gatgtcttcagaggcaataatcctgccaaatatctaaagaattggggttcagcctggggtatgccgagtccctttgacgt tgttgtatttatagataatcacgacaaccagcgcggacacggaggtggtggtggtgtgctaactcactttgaacacagag catacaagatggccactgcctttatgttggcacatccttacgggtttaccagggttatgagcagctatgactggccaaga aacattgtgaacggtgaggataagaacaactggtacggtccaccacataacggtgatatgagtatcaaggggagatcaat caaagccgacctttcctgtggaaatggatggacatgtgagcatagatggcgacagatctacaatatggtggccttcagga accttgtgtttggaaccactgtcaacaactggtgggataatggaaacaaagctatcgctttctccagagggaaccgtggc tttattgtcataaatgatgacacagtagatgtgaatgctaacctacaaacaggactcccgcagggaacttattgtgatgt catatccggaaattatgagaacggcgcatgtaccggaaatgagacatgtgagcatagatggcgccagatttacaatatgg tggccttcaggaaccttgtgtttggaaccactgtcaacaactggtgggataatggaaacaaagctatcgctttctccaga ggaaaccgtggctttattgtcataaatgatgacacagtagatgtgaatgctaatctacaaacaggactcccgcagggaac ttattgtgatgtcatttccggaaattatgagaacggcgcatgtaccggaaatgaggtgcatgtgggtggagatgggcgtg cccatttccatatcagtcaccagagcgaggatcccgttgtggcaatacatataggtgcaaagaaaggaagtccaaagaaa gtcatcctttaa |
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Protein
| Protein ID | pfu_aug2.0_3060.1_02320.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3060.1_02320.t1 MTGGGSGSGTGGSRYDGGSLSYPGVPFSSWDFNAGSECHSGDGDIHNYNDPNEVRNCRLVSLRDLKMSKDYVRDKVADYM NNLINIGVAGFRVDAAKHMWPGDLRAVFGKLHNLNTKYFNSGQKPFIFQEVIDMGGEAIKAAEYTPIARVTNFIYGIKIA DVFRGNNPAKYLKNWGSAWGMPSPFDVVVFIDNHDNQRGHGGGGGVLTHFEHRAYKMATAFMLAHPYGFTRVMSSYDWPR NIVNGEDKNNWYGPPHNGDMSIKGRSIKADLSCGNGWTCEHRWRQIYNMVAFRNLVFGTTVNNWWDNGNKAIAFSRGNRG FIVINDDTVDVNANLQTGLPQGTYCDVISGNYENGACTGNETCEHRWRQIYNMVAFRNLVFGTTVNNWWDNGNKAIAFSR GNRGFIVINDDTVDVNANLQTGLPQGTYCDVISGNYENGACTGNEVHVGGDGRAHFHISHQSEDPVVAIHIGAKKGSPKK VIL |
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