Gene
| Gene Model ID | pfu_aug2.0_3074.1_15709 |
|---|---|
| Locus | scaffold3074.1 : 58844 ... 72445 : - |
| To GenomeBrowser | scaffold3074.1:58844..72445 |
| Genes list of scaffold | scaffold3074.1 |
| Synonym | pfu_aug1.0_5699.1_16737 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| peroxisomal biogenesis factor 19 isoform x1 | GO:0007031 GO:0044424 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3074.1_15709.t1 | 3 | 1 | Pex19 | 11 | 60 | 7.8e-30 | 104.2 | 0.066 | 82.0 | 2.6 |
| pfu_aug2.0_3074.1_15709.t1 | 3 | 2 | Pex19 | 75 | 149 | 7.8e-30 | 104.2 | 9.1e-06 | 0.011 | 15.3 |
| pfu_aug2.0_3074.1_15709.t1 | 3 | 3 | Pex19 | 150 | 248 | 7.8e-30 | 104.2 | 2.7e-31 | 3.4e-28 | 98.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3074.1_15709.t1 | gi|260814193|ref|XP_002601800.1| | hypothetical protein BRAFLDRAFT_121162 [Branchiostoma floridae] | 2.0e-37 |
| pfu_aug2.0_3074.1_15709.t1 | gi|585669605|ref|XP_006817709.1| | PREDICTED: peroxisomal biogenesis factor 19-like [Saccoglossus kowalevskii] | 7.0e-34 |
| pfu_aug2.0_3074.1_15709.t1 | gi|641767935|ref|XP_008168579.1| | PREDICTED: peroxisomal biogenesis factor 19 isoform X1 [Chrysemys picta bellii] | 1.0e-30 |
| pfu_aug2.0_3074.1_15709.t1 | gi|560987055|ref|XP_006215712.1| | PREDICTED: peroxisomal biogenesis factor 19 isoform X1 [Vicugna pacos] | 6.0e-30 |
Transcript
| Transcript ID | pfu_aug2.0_3074.1_15709.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3074.1_15709.t1 atggcggagtcttctcctaatgaagaggggaaattagagagcgatataaagacgaaagctaaggaagagaacaatcagga tgaggaactggatgatttactggaaagtgccttgaaggattttgagaagcaagatgtaaaagaaaagacacagagtgtaa caaagaaaagtgaagaacagaatttgcacgtacccaaccagaattatacacccatgaacaccaaaaacacgtcggagatg tttgccgaggaattctcggacgaaatggcgcggcagttccaggaagctatgcaaggccttgtgggtaatgacgccaattt catgcagcaaatagaaaaactagcagaggctgctggcaaatcaggagaatcccaagaagcacaacaggaatttgctcaaa ctttatccagtacactgaacagtatggcagaaaactccgaacatctacagtatcctaaatggataacagagaacagaggg aaggtagacaaagcccagatgtcgaactacgaacagcaggaaatcttagtacgggaaatttgtaaggaatttgaaagtga gaatgcgtctgatagtagtgatgtacagaaacatcgatttgaaacaatcgtagaccttatgcaacagatgcaagaactag gacaacctccgaaagaaattgtgggagatatggcaccaggactagaatttgaccagaacggaatgcctaaaatgccggga gccccagagggttgctgtatcatgtga |
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Protein
| Protein ID | pfu_aug2.0_3074.1_15709.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3074.1_15709.t1 MAESSPNEEGKLESDIKTKAKEENNQDEELDDLLESALKDFEKQDVKEKTQSVTKKSEEQNLHVPNQNYTPMNTKNTSEM FAEEFSDEMARQFQEAMQGLVGNDANFMQQIEKLAEAAGKSGESQEAQQEFAQTLSSTLNSMAENSEHLQYPKWITENRG KVDKAQMSNYEQQEILVREICKEFESENASDSSDVQKHRFETIVDLMQQMQELGQPPKEIVGDMAPGLEFDQNGMPKMPG APEGCCIM |
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