Gene
| Gene Model ID | pfu_aug2.0_308.1_27194 |
|---|---|
| Locus | scaffold308.1 : 46176 ... 65170 : + |
| To GenomeBrowser | scaffold308.1:46176..65170 |
| Genes list of scaffold | scaffold308.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_308.1_27194.t2 | 2 | 1 | RRM_1 | 11 | 36 | 8.8e-17 | 60.5 | 1.3e-06 | 0.0064 | 16.0 |
| pfu_aug2.0_308.1_27194.t2 | 3 | 1 | RRM_5 | 13 | 49 | 9.6e-11 | 41.3 | 2.1e-08 | 0.0001 | 22.0 |
| pfu_aug2.0_308.1_27194.t2 | 2 | 1 | RRM_6 | 14 | 34 | 3.3e-09 | 36.5 | 0.0012 | 5.8 | 6.9 |
| pfu_aug2.0_308.1_27194.t2 | 2 | 2 | RRM_1 | 208 | 268 | 8.8e-17 | 60.5 | 8.6e-15 | 4.3e-11 | 42.2 |
| pfu_aug2.0_308.1_27194.t2 | 2 | 2 | RRM_6 | 208 | 267 | 3.3e-09 | 36.5 | 5.0e-10 | 2.5e-06 | 27.3 |
| pfu_aug2.0_308.1_27194.t2 | 3 | 2 | RRM_5 | 215 | 231 | 9.6e-11 | 41.3 | 0.7 | 3400.0 | -2.1 |
| pfu_aug2.0_308.1_27194.t2 | 3 | 3 | RRM_5 | 240 | 281 | 9.6e-11 | 41.3 | 1.0e-06 | 0.005 | 16.6 |
Transcript
| Transcript ID | pfu_aug2.0_308.1_27194.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_308.1_27194.t1 atgctacgatatcctaagatgtatacaggcatgcctgttgggttcgttacattcagcacaaggagtgcagcagaagccgc taagcaggacttacagggcgtgaggttcgaccctgacctaccacaaaccttacggttagagtttgcaaagagcaatacaa aagtgacaaagccgaagcagcaaagtccccagccagctgccacccacccaaccctaatccatccaatcactggacaggag ttaggcactgcatttttcccaggtgctaccgaagcatgggcgccacatgccctggccgcatacccagagttagctgcccc tgccacgctccatcatcacacagcacttatacaacacccggctcttgcacaagtaccggaatggatccatcaatttccac agatccatcacccgactgttgtcgcacccccccaagctgtgtcggccgctctgcctcacccacctattgccgccacgcct attttaactagccctcttagcacaaatatcagcaacatcacttcaccgggcacgattcaggtccagacatcccagaccag tacccctggggcgggcacttcagccatgtcgtctctacaacataactcgccatgctcaactttgtttgtggccaatcttg gccagttctcctctgagcaagagttaaaggatttgtttaacagtttccagggtttcagccggctaagaatgcataataaa ggaggatcgccagtagcttttgtagaatttcagggaaagaaggatgaaactccgggtcactcacccgtttcctcggcaac gaccttttcataa |
|
| Transcript ID | pfu_aug2.0_308.1_27194.t2 |
| Definition | - |
>pfu_aug2.0_308.1_27194.t2 atgctacgatatcctaagatgtatacaggcatgcctgttgggttcgttacattcagcacaaggagtgcagcagaagccgc taagcaggacttacagggcgtgaggttcgaccctgacctaccacaaaccttacggttagagtttgcaaagagcaatacaa aagtgacaaagccgaagcagcaaagtccccagccagctgccacccacccaaccctaatccatccaatcactggacaggag ttaggcactgcatttttcccaggtgctaccgaagcatgggcgccacatgccctggccgcatacccagagttagctgcccc tgccacgctccatcatcacacagcacttatacaacacccggctcttgcacaagtaccggaatggatccatcaatttccac agatccatcacccgactgttgtcgcacccccccaagctgtgtcggccgctctgcctcacccacctattgccgccacgcct attttaactagccctcttagcacaaatatcagcaacatcacttcaccgggcacgattcaggtccagacatcccagaccag tacccctggggcgggcacttcagccatgtcgtctctacaacataactcgccatgctcaactttgtttgtggccaatcttg gccagttctcctctgagcaagagttaaaggatttgtttaacagtttccagggtttcagccggctaagaatgcataataaa ggaggatcgccagtagcttttgtagaatttcaggatgttagacaagcgagtgaagccatgaatcgactacagggttttgt cctactttcctctgaccgtggaggaatccgaattgaatatgcaaaaaataaaatgggtgaggtgggaaagaaggatgaaa ctccgggtcactcacccgtttcctcggcaacgaccttttcataa |
|
Protein
| Protein ID | pfu_aug2.0_308.1_27194.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_308.1_27194.t1 MLRYPKMYTGMPVGFVTFSTRSAAEAAKQDLQGVRFDPDLPQTLRLEFAKSNTKVTKPKQQSPQPAATHPTLIHPITGQE LGTAFFPGATEAWAPHALAAYPELAAPATLHHHTALIQHPALAQVPEWIHQFPQIHHPTVVAPPQAVSAALPHPPIAATP ILTSPLSTNISNITSPGTIQVQTSQTSTPGAGTSAMSSLQHNSPCSTLFVANLGQFSSEQELKDLFNSFQGFSRLRMHNK GGSPVAFVEFQGKKDETPGHSPVSSATTFS |
|
| Protein ID | pfu_aug2.0_308.1_27194.t2 |
| Definition | - |
>pfu_aug2.0_308.1_27194.t2 MLRYPKMYTGMPVGFVTFSTRSAAEAAKQDLQGVRFDPDLPQTLRLEFAKSNTKVTKPKQQSPQPAATHPTLIHPITGQE LGTAFFPGATEAWAPHALAAYPELAAPATLHHHTALIQHPALAQVPEWIHQFPQIHHPTVVAPPQAVSAALPHPPIAATP ILTSPLSTNISNITSPGTIQVQTSQTSTPGAGTSAMSSLQHNSPCSTLFVANLGQFSSEQELKDLFNSFQGFSRLRMHNK GGSPVAFVEFQDVRQASEAMNRLQGFVLLSSDRGGIRIEYAKNKMGEVGKKDETPGHSPVSSATTFS |
|