Gene
| Gene Model ID | pfu_aug2.0_3083.1_12374 |
|---|---|
| Locus | scaffold3083.1 : 40326 ... 51163 : + |
| To GenomeBrowser | scaffold3083.1:40326..51163 |
| Genes list of scaffold | scaffold3083.1 |
| Synonym | pfu_aug1.0_5263.1_52506 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3083.1_12374.t1 | 1 | 1 | RRM_1 | 9 | 70 | 1.6e-16 | 59.6 | 1.0e-19 | 2.1e-16 | 59.2 |
| pfu_aug2.0_3083.1_12374.t1 | 1 | 1 | RRM_6 | 9 | 70 | 5.9e-11 | 42.1 | 3.7e-14 | 7.9e-11 | 41.7 |
| pfu_aug2.0_3083.1_12374.t1 | 1 | 1 | RRM_5 | 26 | 75 | 1.3e-09 | 37.7 | 9.7e-13 | 2.0e-09 | 37.1 |
| pfu_aug2.0_3083.1_12374.t1 | 1 | 1 | zf-CCHC | 90 | 106 | 1.6e-07 | 30.9 | 1.5e-10 | 3.2e-07 | 29.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3083.1_12374.t1 | gi|291231291|ref|XP_002735598.1| | PREDICTED: RNA-binding protein lark-like isoform X1 [Saccoglossus kowalevskii] | 3.00004e-41 |
| pfu_aug2.0_3083.1_12374.t1 | gi|524894544|ref|XP_005103769.1| | PREDICTED: RNA-binding protein lark-like isoform X9 [Aplysia californica] | 2.0e-40 |
| pfu_aug2.0_3083.1_12374.t1 | gi|291231293|ref|XP_002735599.1| | PREDICTED: RNA-binding protein lark-like isoform X2 [Saccoglossus kowalevskii] | 1.0e-39 |
| pfu_aug2.0_3083.1_12374.t1 | gi|524894542|ref|XP_005103768.1| | PREDICTED: RNA-binding protein lark-like isoform X8 [Aplysia californica] | 3.0e-39 |
| pfu_aug2.0_3083.1_12374.t1 | gi|524894528|ref|XP_005103761.1| | PREDICTED: RNA-binding protein lark-like isoform X1 [Aplysia californica] | 3.0e-39 |
Transcript
| Transcript ID | pfu_aug2.0_3083.1_12374.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3083.1_12374.t1 atgcctccatcagtttctaccaaactctatgttgggaatcttccagaaacatgccgaaaagtagaactggagaaaatgtt tgcagaatatggcaaagttcttgaatgtgatatagtcagaaattatgcatttgttcattttgacaatccaaatgaagcca agatggcccaagcaaatttagatggagctgagtttgaaggtgttaaattaaaagtagagctctcacacagtaaagttcga cagaagcctggaatgggtgggaaaggagaatgttatcgttgtggtagagagggtcactggtcagcagattgtccaaaagg cccaagcagacctaaaggaagaccagacccttacatgagagatccctacccccctccaagggacccctacccagatcctt actacagagaccgatatccccctccccctccacatgacagatataggccatatcctgacccgtatgagagacgaccgctc cctcccccacgagatccatactacagggagagagtagatccatacgccagaccacccccagagtactacggtaggaggtc acctcctccaatatcaaggtatgtctgtgcttttatgccatattcatgtatgtacagtttttaa |
|
Protein
| Protein ID | pfu_aug2.0_3083.1_12374.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3083.1_12374.t1 MPPSVSTKLYVGNLPETCRKVELEKMFAEYGKVLECDIVRNYAFVHFDNPNEAKMAQANLDGAEFEGVKLKVELSHSKVR QKPGMGGKGECYRCGREGHWSADCPKGPSRPKGRPDPYMRDPYPPPRDPYPDPYYRDRYPPPPPHDRYRPYPDPYERRPL PPPRDPYYRERVDPYARPPPEYYGRRSPPPISRYVCAFMPYSCMYSF |
|