Gene
| Gene Model ID | pfu_aug2.0_3083.1_12375 |
|---|---|
| Locus | scaffold3083.1 : 51745 ... 67015 : - |
| To GenomeBrowser | scaffold3083.1:51745..67015 |
| Genes list of scaffold | scaffold3083.1 |
| Synonym | pfu_aug1.0_5263.1_52507 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 28s ribosomal protein mitochondrial | GO:0043229 GO:0044444 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3083.1_12375.t1 | 1 | 1 | Ribosomal_S10 | 86 | 187 | 2.5e-17 | 62.5 | 5.1e-21 | 3.8e-17 | 61.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3083.1_12375.t1 | gi|261289223|ref|XP_002603054.1| | hypothetical protein BRAFLDRAFT_198892 [Branchiostoma floridae] | 7.0e-40 |
| pfu_aug2.0_3083.1_12375.t1 | gi|327262410|ref|XP_003216017.1| | PREDICTED: 28S ribosomal protein S10, mitochondrial [Anolis carolinensis] | 4.0e-39 |
| pfu_aug2.0_3083.1_12375.t1 | gi|410926469|ref|XP_003976701.1| | 1.0e-36 | |
| pfu_aug2.0_3083.1_12375.t1 | gi|326912583|ref|XP_003202628.1| | PREDICTED: 28S ribosomal protein S10, mitochondrial [Meleagris gallopavo] | 3.0e-36 |
| pfu_aug2.0_3083.1_12375.t1 | gi|478431035|ref|NP_001264505.1| | mitochondrial ribosomal protein S10 [Gallus gallus] | 6.0e-36 |
Transcript
| Transcript ID | pfu_aug2.0_3083.1_12375.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3083.1_12375.t1 atgactacacgacatttgaacaaaattttgtttccaattcagaatgcacaatggagaaattatgtatgctcagcaagcag gattctagctgtcaggcatagacaaaaactctgtgtaacatcagcatgtgatagaacgaagctgctgaataaagtgtctg ggcatcaaatagcctcctatcatcccatattgagcaaagagtactccacaaatgcaagttccacagaagaagaagaagat gacctctatcgcctgatctccttggagatgaaaggtcacgacaaggcggtgttagatagttatacaaattttattgtaac agctgctgatgagctatccttaaaatgtagagtcttggataaaacggagacaccaaaggtacattatgacagacagactt tacttaaatctgttcatgtaaacaaaacggctatggcgcaatatgaagtacggacccactatagtattatacattttaaa catttgactggaactactgtcagtattgttttggaatacctagaaaggaacctaccagagggagtggcagtcaaagtctc aaagcaccgactagagagagtgcctgatcaccttgtaccaccaaaggaggctgtggaaacgtag |
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Protein
| Protein ID | pfu_aug2.0_3083.1_12375.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3083.1_12375.t1 MTTRHLNKILFPIQNAQWRNYVCSASRILAVRHRQKLCVTSACDRTKLLNKVSGHQIASYHPILSKEYSTNASSTEEEED DLYRLISLEMKGHDKAVLDSYTNFIVTAADELSLKCRVLDKTETPKVHYDRQTLLKSVHVNKTAMAQYEVRTHYSIIHFK HLTGTTVSIVLEYLERNLPEGVAVKVSKHRLERVPDHLVPPKEAVET |
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