Gene
| Gene Model ID | pfu_aug2.0_31.1_03452 |
|---|---|
| Locus | scaffold31.1 : 130166 ... 131502 : + |
| To GenomeBrowser | scaffold31.1:130166..131502 |
| Genes list of scaffold | scaffold31.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_31.1_03452.t1 | 2 | 1 | C1q | 41 | 65 | 4.6e-24 | 84.8 | 0.64 | 2400.0 | -1.6 |
| pfu_aug2.0_31.1_03452.t1 | 2 | 2 | C1q | 81 | 203 | 4.6e-24 | 84.8 | 1.2e-27 | 4.6e-24 | 84.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_31.1_03452.t1 | gi|348534615|ref|XP_003454797.1| | PREDICTED: complement C1q subcomponent subunit B-like [Oreochromis niloticus] | 8.0e-16 |
| pfu_aug2.0_31.1_03452.t1 | gi|742248973|ref|XP_010866220.1| | PREDICTED: complement C1q-like protein 2 [Esox lucius] | 6.0e-15 |
| pfu_aug2.0_31.1_03452.t1 | gi|617466913|ref|XP_007574025.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 3-like [Poecilia formosa] | 8.0e-15 |
Transcript
| Transcript ID | pfu_aug2.0_31.1_03452.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_31.1_03452.t1 atgtctttgctaaaatttgccgtactattattccttgccttccagtcaatggcagatcaaactaaggaggactgtgtaat gaaatatgtactgcagaagctagatagcctaactgctgacttcaaagtatacaaacagaaactcaatgatgaaatgcaaa gaacgagcgccatggcaaagcaaataatgaaactgacagcggaaacagaactgctgaaaaaatctacaggatcagtgtct ttctcagcatacatgaaacccagtctaacaacaaagaaattccaaatcattccgtttcgaggaatccaaactaatgtagg cggtgcatataaccctagtactgggaaattcactgcgccagtcgatggattgtactacttccattgtagcatcctctcta aacttgctggtgaatatcaactacaggcaaatggacgacaaggagtggacatcataactggtgaaaataataaatgggat caatcaggaaatgctgtcatactgaatctgaagagaggggacaaagtctacattaaatctacacatatgagtggaaacaa atcgttctatgtacataactactggagcactttcagcggattcctcgttaaggcaagttcctaa |
|
Protein
| Protein ID | pfu_aug2.0_31.1_03452.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_31.1_03452.t1 MSLLKFAVLLFLAFQSMADQTKEDCVMKYVLQKLDSLTADFKVYKQKLNDEMQRTSAMAKQIMKLTAETELLKKSTGSVS FSAYMKPSLTTKKFQIIPFRGIQTNVGGAYNPSTGKFTAPVDGLYYFHCSILSKLAGEYQLQANGRQGVDIITGENNKWD QSGNAVILNLKRGDKVYIKSTHMSGNKSFYVHNYWSTFSGFLVKASS |
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