Gene
| Gene Model ID | pfu_aug2.0_31.1_03453 |
|---|---|
| Locus | scaffold31.1 : 140276 ... 160458 : + |
| To GenomeBrowser | scaffold31.1:140276..160458 |
| Genes list of scaffold | scaffold31.1 |
| Synonym | pfu_aug1.0_42724.1_05228 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| tho complex subunit 2 isoform x3 | GO:0006406 GO:0043234 GO:0044428 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_31.1_03453.t1 | 3 | 1 | Thoc2 | 379 | 403 | 4.2e-33 | 112.9 | 0.19 | 1400.0 | -0.9 |
| pfu_aug2.0_31.1_03453.t1 | 3 | 2 | Thoc2 | 525 | 554 | 4.2e-33 | 112.9 | 1.1e-10 | 8.4e-07 | 28.6 |
| pfu_aug2.0_31.1_03453.t1 | 3 | 3 | Thoc2 | 554 | 615 | 4.2e-33 | 112.9 | 6.0e-27 | 4.5e-23 | 80.8 |
| pfu_aug2.0_31.1_03453.t1 | 1 | 1 | Tho2 | 847 | 925 | 2.0e-11 | 43.5 | 6.3e-15 | 4.7e-11 | 42.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_31.1_03453.t1 | gi|524880938|ref|XP_005097127.1| | PREDICTED: THO complex subunit 2-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_31.1_03453.t1 | gi|556976303|ref|XP_005995623.1| | PREDICTED: THO complex subunit 2 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_31.1_03453.t1 | gi|725575696|ref|XP_010340016.1| | PREDICTED: THO complex subunit 2 isoform X4 [Saimiri boliviensis boliviensis] | 0.0 |
| pfu_aug2.0_31.1_03453.t1 | gi|725575698|ref|XP_010340017.1| | PREDICTED: THO complex subunit 2 isoform X5 [Saimiri boliviensis boliviensis] | 0.0 |
| pfu_aug2.0_31.1_03453.t1 | gi|291408143|ref|XP_002720317.1| | PREDICTED: THO complex subunit 2 isoform X1 [Oryctolagus cuniculus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_31.1_03453.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_31.1_03453.t1 atggcggctgctgtggaccactgctgtaaattatgggaaaaaagcggcaaagcagaattgatcaagttatgcagaaatca acctgaaagcaacttacaattgggaactgtgtctcgtgttatcaaaagatccttttacgaggtgtgctggcaagtcatca aaggaaatgtaaagctggaaacagcagtacatgctctgggggaagtttgtgattatgtcaaggatgctgcaccacatctg gcagatgtcttctccttgatagacttagaatgcctggcacaagatgacaaggacctacgtgataaacttgtagacatcat tgccgcttgtgagagttcagtgactatagctgtccttaaagaaagactggatcaggagctactggaaaatgttggcctga ttccatctaagttagcatttcagaaaacctatgtcaagatcaaaacaaaattgtactataagcagcagaagtttaacttg ctaagagaggagagtgagggatacgccaagcttataacagaactgaatcaggatattacagactccctatcaccatcaca gtgtgttcagaaccttaaatcacttataggttgctttgacctagatcccaatagggtaatagatattctgttagagtcgt ttgaatgccgtccacatctgggaagtttttacatccctattttcaaggagtatgtgacagatagaactactctttgtcag atccttggatttaaatttcacttctatcagctgtctcctactgatgataaggtaaaggagtacaatcagaaggagatcga tgaggccaagtcatatgccaggaaactgaacgtggtcagtctcgcagataaaacagacgatcctaaagactcggaaaatg tcaaagtagatctgtatgcaacaaatcagaagatagggttatgtgaggctttgttgaatctgggagcgtggaaaaatgcc aaggatatcctggacagactgccggagttctttgccatggttcacaagcctattgccagtgccatgtgtttactgatcca ctatctcatagatccactctacagagaaaatacggttattcccaaaagagtactaaaggggagattgtcaagcaaacata aatatgacagtgatgtcaacaaagtacatacatatagagatttacatggagaagtgttccctatcatgagatacctaggt ccatactcagcatgtgatcctgtcttgctagtcaagatcatcaggctcggaaagtcctttatgcttaagagacattcagg aggtataagtgcagaggatgaggtagcttactatggtattctgaacatgttagacgaggttttacttcccagtatggcct tcttaccgtgtaattgttgtatctctgaggagctgtggggactccttaaactattcccttatgaactcaggtaccgattg tatggtaattggaaaaatgacacgtacagtcatcatccaaaactcatcagaatcagggcagactgtctggagagagccag atatcttatgaagcgtttgtccaaagagaatgtaaagccttcagggagacagctcggcaaacttagtcacagtaacccag gagtactttttgaatacacactgtctcagattcagcgatatgacaactttataggaccagtgacactgtctcagattcag cgatatgacaactttataggaccggtagtagatacactcaagttccttacctctctgtcttatgatgtcctagcttactg catcatagaagctgtggctaatccagagaaggaccgaatgaagcatgatgatacaaacatctcactttggctccagagtt tggccaactttgccgggtctatatgtaggaagtaccaggtggagctggctgggctgttgcagtatgtagcaaatcaactc aaagctggaaaaagttatgatcttctaatcctgagggagatagtgacaaaaatggctggtatagaaatatcggaggaaat cacaaacgaccagttagaggccatgactggaggagaactcctacgacaagagggtggatattttgctcaagtacggaata caaagaagtcgtcaacaagactgaaagacacgttactggagcataacttggctttgtcactctgcttattgatggcacaa cagagggatggagttatctaccatgaaggaagtgagagccaccttaagctggttggcaaactgtatgatcagtgtcaaga cacattagttcagttcggtagtttcttgtccatgcagctgagtacagaggagttcgttaaacgacttcctagtatagaca ctctcatgtctagctaccacattcctgcagactcggctttcttcttgagtagacctcagtatgcatacgcaatcagctcc aggtttgaagaactgaggaaaattgacaagagtaataaacaaggaggcagtcagttaaaattacagagatttattgaagc gtcagaggagatgatgcagcctgtgatagagcttattcgtcctttatattcatcaagggtgtgggaagatctcagtccac agttttatgtgacgttttggtccctacagatgtatgacctttttgtaccgaccagtgtatatgagaagcagattcagcag ttacaagctcaggcttcagccgccgaggacaacaaagacttgttaaaatcactaaaatgtgtgacattggacgccatgat gtcacagtttaccattgttgatatagataacaaaatagcagcgatctcaaatgaacatggaaattcccatagacatttta ttttcagtatcgcaggtttaaaacagttgaaagcttttgctgttacaactaaaggagactcagggaaaaaggaagaaaga aaaggagagatgtcataa |
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Protein
| Protein ID | pfu_aug2.0_31.1_03453.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_31.1_03453.t1 MAAAVDHCCKLWEKSGKAELIKLCRNQPESNLQLGTVSRVIKRSFYEVCWQVIKGNVKLETAVHALGEVCDYVKDAAPHL ADVFSLIDLECLAQDDKDLRDKLVDIIAACESSVTIAVLKERLDQELLENVGLIPSKLAFQKTYVKIKTKLYYKQQKFNL LREESEGYAKLITELNQDITDSLSPSQCVQNLKSLIGCFDLDPNRVIDILLESFECRPHLGSFYIPIFKEYVTDRTTLCQ ILGFKFHFYQLSPTDDKVKEYNQKEIDEAKSYARKLNVVSLADKTDDPKDSENVKVDLYATNQKIGLCEALLNLGAWKNA KDILDRLPEFFAMVHKPIASAMCLLIHYLIDPLYRENTVIPKRVLKGRLSSKHKYDSDVNKVHTYRDLHGEVFPIMRYLG PYSACDPVLLVKIIRLGKSFMLKRHSGGISAEDEVAYYGILNMLDEVLLPSMAFLPCNCCISEELWGLLKLFPYELRYRL YGNWKNDTYSHHPKLIRIRADCLERARYLMKRLSKENVKPSGRQLGKLSHSNPGVLFEYTLSQIQRYDNFIGPVTLSQIQ RYDNFIGPVVDTLKFLTSLSYDVLAYCIIEAVANPEKDRMKHDDTNISLWLQSLANFAGSICRKYQVELAGLLQYVANQL KAGKSYDLLILREIVTKMAGIEISEEITNDQLEAMTGGELLRQEGGYFAQVRNTKKSSTRLKDTLLEHNLALSLCLLMAQ QRDGVIYHEGSESHLKLVGKLYDQCQDTLVQFGSFLSMQLSTEEFVKRLPSIDTLMSSYHIPADSAFFLSRPQYAYAISS RFEELRKIDKSNKQGGSQLKLQRFIEASEEMMQPVIELIRPLYSSRVWEDLSPQFYVTFWSLQMYDLFVPTSVYEKQIQQ LQAQASAAEDNKDLLKSLKCVTLDAMMSQFTIVDIDNKIAAISNEHGNSHRHFIFSIAGLKQLKAFAVTTKGDSGKKEER KGEMS |
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