Gene
| Gene Model ID | pfu_aug2.0_31.1_03454 |
|---|---|
| Locus | scaffold31.1 : 160516 ... 177593 : + |
| To GenomeBrowser | scaffold31.1:160516..177593 |
| Genes list of scaffold | scaffold31.1 |
| Synonym | pfu_aug1.0_4205.1_59467 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_31.1_03454.t4 | 5 | 1 | Tho2 | 2 | 127 | 2.1e-29 | 102.5 | 1.4e-33 | 2.1e-29 | 102.5 |
| pfu_aug2.0_31.1_03454.t4 | 5 | 2 | Tho2 | 141 | 154 | 2.1e-29 | 102.5 | 0.3 | 4400.0 | -3.6 |
| pfu_aug2.0_31.1_03454.t4 | 5 | 3 | Tho2 | 225 | 257 | 2.1e-29 | 102.5 | 1.0 | 15000.0 | -8.4 |
| pfu_aug2.0_31.1_03454.t4 | 5 | 4 | Tho2 | 280 | 344 | 2.1e-29 | 102.5 | 0.57 | 8500.0 | -4.6 |
| pfu_aug2.0_31.1_03454.t4 | 5 | 5 | Tho2 | 366 | 414 | 2.1e-29 | 102.5 | 1.0 | 15000.0 | -8.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_31.1_03454.t4 | gi|641775973|ref|XP_008171288.1| | PREDICTED: LOW QUALITY PROTEIN: THO complex subunit 2 [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_31.1_03454.t4 | gi|612057948|ref|XP_007507129.1| | PREDICTED: THO complex subunit 2 isoform X2 [Monodelphis domestica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_31.1_03454.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_31.1_03454.t1 atgcgttggcatagcaacaaagatatatatgacaaggagtgtgggtcgtacccagggtttgtgactgtgttcaggaaagg tatagaaacccagccagcccagcagatcaaagctgaccaactggactacgaaaattaccgccatgtttgtcacaagtggc acttcaggatcaccaaagcaatggtagcttgtttggagtctggtaactacatacagatacgcaatgctctcattgttctc acaaagattttaccaaactatcctaagataacccagtttggtcaagctctagagagacgagtagacagactgaggcaaga agaaaaagagaaaagacctgatatctatgcactagccatgggatattctggacagcttaagtcaaagaagacatcctggg tacaagaacaccagtttcactacaaagagattctgcaaaagggtaagggtgtggtgacaaaggcaacatcaacagtaccc aatggaccagtggccggatccagtgcatctcaatccgccgcaagaagtgacggaacctcagcgcaggcttccacctcatc atccaagaaaagcagcagtgatactaaagtgtcaaagaaaacagatggtgaaaccaagacaaaggaaaagaaagagaaaa agtccagtgacaaaaaggacaagtctaaatctgacaagaagggagctgatggggacaagaaagatttggttaatggcaca aagactaaagagaagaaagaaaagagagacaaggaagataaaaaagagaaaagtcattcagcagagaaatcaagcactga caaaagtcagaatgaggagaaaaactcacatgacaaaggtcaagaaggttcaaaggacaaggaaagtttaaaagtcaaag aaagttcaaaggtcaaggagagaaaggaaaaacatgagggaaagcagagtgaagttaaagtaaaagtgaaagaagaaaaa gacaagtgggaagaaccatctacttctgatggaaagaccccagatgctaaaacccgtcataaagaggaaacgcataactc agaagttaaaagtgaacgacgggaaatcaagatcgagagacatcaggaaacgaaggaagatcgtaaatctgaaaaggagg tcaaggtcaaagaagaaaaacaagagaaagaaggcaaatcaaaggaagacagacatggtaaaatcaaacgaagctacagc cctgagaaagatgctagtgagagggaatctgggaagggtcaccaacgggagcacggagagagtagcgacagcagagtctt acaccatcatcgatcccctgaaccatcttcatctaaacaaagtgatgagagagaggtgaaaagacgcaaactagagggac aggcttcaggttcaaaggagagggagaggagtgagtcaaaggagcgacatcacaagaaatag |
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| Transcript ID | pfu_aug2.0_31.1_03454.t2 |
| Definition | - |
>pfu_aug2.0_31.1_03454.t2 atgcgttggcatagcaacaaagatatatatgacaaggagtgtgggtcgtacccagggtttgtgactgtgttcaggaaagg tatagaaacccagccagcccagcagatcaaagctgaccaactggactacgaaaattaccgccatgtttgtcacaagtggc acttcaggatcaccaaagcaatggtagcttgtttggagtctggtaactacatacagatacgcaatgctctcattgttctc acaaagattttaccaaactatcctaagataacccagtttggtcaagctctagagagacgagtagacagactgaggcaaga agaaaaagagaaaagacctgatatctatgcactagccatgggatattctggacagcttaagtcaaagaagacatcctggg tacaagaacaccagtttcactacaaagaggtttgtatagccaaatattctggacagcttaagtcaaagaagacatcctgg gtacaagaacaccagtttcactacaaagagattctgcaaaagtatctcacatacatacatggtaagggtgtggtgacaaa ggcaacatcaacagtacccaatggaccagtggccggatccagtgcatctcaatccgccgcaagaagtgacggaacctcag cgcaggcttccacctcatcatccaagaaaagcagcagtgatactaaagtgtcaaagaaaacagatggtgaaaccaagaca aaggaaaagaaagagaaaaagtccagtgacaaaaaggacaagtctaaatctgacaagaagggagctgatggggacaagaa agatttggttaatggcacaaagactaaagagaagaaagaaaagagagacaaggaagataaaaaagagaaaagtcattcag cagagaaatcaagcactgacaaaagtcagaatgaggagaaaaactcacatgacaaaggtcaagaaggttcaaaggacaag gaaagtttaaaagtcaaagaaagttcaaaggtcaaggagagaaaggaaaaacatgagggaaagcagagtgaagttaaagt aaaagtgaaagaagaaaaagacaagtgggaagaaccatctacttctgatggaaagaccccagatgctaaaacccgtcata aagaggaaacgcataactcagaagttaaaagtgaacgacgggaaatcaagatcgagagacatcaggaaacgaaggaagat cgtaaatctgaaaaggaggtcaaggtcaaagaagaaaaacaagagaaagaaggcaaatcaaaggaagacagacatggtaa aatcaaacgaagctacagccctgagaaagatgctagtgagagggaatctgggaagggtcaccaacgggagcacggagaga gtagcgacagcagagtcttacaccatcatcgatcccctgaaccatcttcatctaaacaaagtgatgagagagaggtgaaa agacgcaaactagagggacaggcttcaggttcaaaggagagggagaggagtgagtcaaaggagcgacatcacaagaaata g |
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| Transcript ID | pfu_aug2.0_31.1_03454.t3 |
| Definition | - |
>pfu_aug2.0_31.1_03454.t3 atgcgttggcatagcaacaaagatatatatgacaaggagtgtgggtcgtacccagggtttgtgactgtgttcaggaaagg tatagaaacccagccagcccagcagatcaaagctgaccaactggactacgaaaattaccgccatgtttgtcacaagtggc acttcaggatcaccaaagcaatggtagcttgtttggagtctggtaactacatacagatacgcaatgctctcattgttctc acaaagattttaccaaactatcctaagataacccagtttggtcaagctctagagagacgagtagacagactgaggcaaga agaaaaagagaaaagacctgatatctatgcactagccatgggatattctggacagcttaagtcaaagaagacatcctggg tacaagaacaccagtttcactacaaagaggtttgtatagccaaatattctggacagcttaagtcaaagaagacatcctgg gtacaagaacaccagtttcactacaaagagattctgcaaaagggtaagggtgtggtgacaaaggcaacatcaacagtacc caatggaccagtggccggatccagtgcatctcaatccgccgcaagaagtgacggaacctcagcgcaggcttccacctcat catccaagaaaagcagcagtgatactaaagtgtcaaagaaaacagatggtgaaaccaagacaaaggaaaagaaagagaaa aagtccagtgacaaaaaggacaagtctaaatctgacaagaagggagctgatggggacaagaaagatttggttaatggcac aaagactaaagagaagaaagaaaagagagacaaggaagataaaaaagagaaaagtcattcagcagagaaatcaagcactg acaaaagtcagaatgaggagaaaaactcacatgacaaaggtcaagaaggttcaaaggacaaggaaagtttaaaagtcaaa gaaagttcaaaggtcaaggagagaaaggaaaaacatgagggaaagcagagtgaagttaaagtaaaagtgaaagaagaaaa agacaagtgggaagaaccatctacttctgatggaaagaccccagatgctaaaacccgtcataaagaggaaacgcataact cagaagttaaaagtgaacgacgggaaatcaagatcgagagacatcaggaaacgaaggaagatcgtaaatctgaaaaggag gtcaaggtcaaagaagaaaaacaagagaaagaaggcaaatcaaaggaagacagacatggtaaaatcaaacgaagctacag ccctgagaaagatgctagtgagagggaatctgggaagggtcaccaacgggagcacggagagagtagcgacagcagagtct tacaccatcatcgatcccctgaaccatcttcatctaaacaaagtgatgagagagaggtgaaaagacgcaaactagaggga caggcttcaggttcaaaggagagggagaggagtgagtcaaaggagcgacatcacaagaaatag |
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| Transcript ID | pfu_aug2.0_31.1_03454.t4 |
| Definition | - |
>pfu_aug2.0_31.1_03454.t4 atgcgttggcatagcaacaaagatatatatgacaaggagtgtgggtcgtacccagggtttgtgactgtgttcaggaaagg tatagaaacccagccagcccagcagatcaaagctgaccaactggactacgaaaattaccgccatgtttgtcacaagtggc acttcaggatcaccaaagcaatggtagcttgtttggagtctggtaactacatacagatacgcaatgctctcattgttctc acaaagattttaccaaactatcctaagataacccagtttggtcaagctctagagagacgagtagacagactgaggcaaga agaaaaagagaaaagacctgatatctatgcactagccatgggatattctggacagcttaagtcaaagaagacatcctggg tacaagaacaccagtttcactacaaagagcttaagtcaaagaagacatcctgggtacaagaacaccagtttcactacaaa gagattctgcaaaagggtaagggtgtggtgacaaaggcaacatcaacagtacccaatggaccagtggccggatccagtgc atctcaatccgccgcaagaagtgacggaacctcagcgcaggcttccacctcatcatccaagaaaagcagcagtgatacta aagtgtcaaagaaaacagatggtgaaaccaagacaaaggaaaagaaagagaaaaagtccagtgacaaaaaggacaagtct aaatctgacaagaagggagctgatggggacaagaaagatttggttaatggcacaaagactaaagagaagaaagaaaagag agacaaggaagataaaaaagagaaaagtcattcagcagagaaatcaagcactgacaaaagtcagaatgaggagaaaaact cacatgacaaaggtcaagaaggttcaaaggacaaggaaagtttaaaagtcaaagaaagttcaaaggtcaaggagagaaag gaaaaacatgagggaaagcagagtgaagttaaagtaaaagtgaaagaagaaaaagacaagtgggaagaaccatctacttc tgatggaaagaccccagatgctaaaacccgtcataaagaggaaacgcataactcagaagttaaaagtgaacgacgggaaa tcaagatcgagagacatcaggaaacgaaggaagatcgtaaatctgaaaaggaggtcaaggtcaaagaagaaaaacaagag aaagaaggcaaatcaaaggaagacagacatggtaaaatcaaacgaagctacagccctgagaaagatgctagtgagaggga atctgggaagggtcaccaacgggagcacggagagagtagcgacagcagagtcttacaccatcatcgatcccctgaaccat cttcatctaaacaaagtgatgagagagaggtgaaaagacgcaaactagagggacaggcttcaggttcaaaggagagggag aggagtgagtcaaaggagcgacatcacaagaaatag |
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Protein
| Protein ID | pfu_aug2.0_31.1_03454.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_31.1_03454.t1 MRWHSNKDIYDKECGSYPGFVTVFRKGIETQPAQQIKADQLDYENYRHVCHKWHFRITKAMVACLESGNYIQIRNALIVL TKILPNYPKITQFGQALERRVDRLRQEEKEKRPDIYALAMGYSGQLKSKKTSWVQEHQFHYKEILQKGKGVVTKATSTVP NGPVAGSSASQSAARSDGTSAQASTSSSKKSSSDTKVSKKTDGETKTKEKKEKKSSDKKDKSKSDKKGADGDKKDLVNGT KTKEKKEKRDKEDKKEKSHSAEKSSTDKSQNEEKNSHDKGQEGSKDKESLKVKESSKVKERKEKHEGKQSEVKVKVKEEK DKWEEPSTSDGKTPDAKTRHKEETHNSEVKSERREIKIERHQETKEDRKSEKEVKVKEEKQEKEGKSKEDRHGKIKRSYS PEKDASERESGKGHQREHGESSDSRVLHHHRSPEPSSSKQSDEREVKRRKLEGQASGSKERERSESKERHHKK |
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| Protein ID | pfu_aug2.0_31.1_03454.t2 |
| Definition | - |
>pfu_aug2.0_31.1_03454.t2 MRWHSNKDIYDKECGSYPGFVTVFRKGIETQPAQQIKADQLDYENYRHVCHKWHFRITKAMVACLESGNYIQIRNALIVL TKILPNYPKITQFGQALERRVDRLRQEEKEKRPDIYALAMGYSGQLKSKKTSWVQEHQFHYKEVCIAKYSGQLKSKKTSW VQEHQFHYKEILQKYLTYIHGKGVVTKATSTVPNGPVAGSSASQSAARSDGTSAQASTSSSKKSSSDTKVSKKTDGETKT KEKKEKKSSDKKDKSKSDKKGADGDKKDLVNGTKTKEKKEKRDKEDKKEKSHSAEKSSTDKSQNEEKNSHDKGQEGSKDK ESLKVKESSKVKERKEKHEGKQSEVKVKVKEEKDKWEEPSTSDGKTPDAKTRHKEETHNSEVKSERREIKIERHQETKED RKSEKEVKVKEEKQEKEGKSKEDRHGKIKRSYSPEKDASERESGKGHQREHGESSDSRVLHHHRSPEPSSSKQSDEREVK RRKLEGQASGSKERERSESKERHHKK |
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| Protein ID | pfu_aug2.0_31.1_03454.t3 |
| Definition | - |
>pfu_aug2.0_31.1_03454.t3 MRWHSNKDIYDKECGSYPGFVTVFRKGIETQPAQQIKADQLDYENYRHVCHKWHFRITKAMVACLESGNYIQIRNALIVL TKILPNYPKITQFGQALERRVDRLRQEEKEKRPDIYALAMGYSGQLKSKKTSWVQEHQFHYKEVCIAKYSGQLKSKKTSW VQEHQFHYKEILQKGKGVVTKATSTVPNGPVAGSSASQSAARSDGTSAQASTSSSKKSSSDTKVSKKTDGETKTKEKKEK KSSDKKDKSKSDKKGADGDKKDLVNGTKTKEKKEKRDKEDKKEKSHSAEKSSTDKSQNEEKNSHDKGQEGSKDKESLKVK ESSKVKERKEKHEGKQSEVKVKVKEEKDKWEEPSTSDGKTPDAKTRHKEETHNSEVKSERREIKIERHQETKEDRKSEKE VKVKEEKQEKEGKSKEDRHGKIKRSYSPEKDASERESGKGHQREHGESSDSRVLHHHRSPEPSSSKQSDEREVKRRKLEG QASGSKERERSESKERHHKK |
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| Protein ID | pfu_aug2.0_31.1_03454.t4 |
| Definition | - |
>pfu_aug2.0_31.1_03454.t4 MRWHSNKDIYDKECGSYPGFVTVFRKGIETQPAQQIKADQLDYENYRHVCHKWHFRITKAMVACLESGNYIQIRNALIVL TKILPNYPKITQFGQALERRVDRLRQEEKEKRPDIYALAMGYSGQLKSKKTSWVQEHQFHYKELKSKKTSWVQEHQFHYK EILQKGKGVVTKATSTVPNGPVAGSSASQSAARSDGTSAQASTSSSKKSSSDTKVSKKTDGETKTKEKKEKKSSDKKDKS KSDKKGADGDKKDLVNGTKTKEKKEKRDKEDKKEKSHSAEKSSTDKSQNEEKNSHDKGQEGSKDKESLKVKESSKVKERK EKHEGKQSEVKVKVKEEKDKWEEPSTSDGKTPDAKTRHKEETHNSEVKSERREIKIERHQETKEDRKSEKEVKVKEEKQE KEGKSKEDRHGKIKRSYSPEKDASERESGKGHQREHGESSDSRVLHHHRSPEPSSSKQSDEREVKRRKLEGQASGSKERE RSESKERHHKK |
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