Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_31.1_03469
Locus scaffold31.1 : 482254 ... 506017 : +
To GenomeBrowser scaffold31.1:482254..506017
Genes list of scaffold scaffold31.1
Synonym pfu_aug1.0_1714.1_08083

Manual annotation
Annotation by Blast2GO
Annotation GO
ser thr protein GO:0004683 GO:0004687 GO:0005524 GO:0005737 GO:0006468 GO:0006939 GO:0006950 GO:0007015 GO:0030335 GO:0043226

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_31.1_03469.t1 1 1 Pkinase 41 287 0.0 226.6 0.0 0.0 226.2
pfu_aug2.0_31.1_03469.t1 1 1 Pkinase_Tyr 41 283 7.1e-37 126.8 2.6e-40 9.8e-37 126.4

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_31.1_03469.t1 gi|676481510|ref|XP_009062400.1| hypothetical protein LOTGIDRAFT_235177 [Lottia gigantea] 0.0
pfu_aug2.0_31.1_03469.t1 gi|241638790|ref|XP_002410770.1| Ser/Thr protein kinase, putative [Ixodes scapularis] 0.0
pfu_aug2.0_31.1_03469.t1 gi|269784881|ref|NP_001161592.1| myosin light chain kinase-like protein [Saccoglossus kowalevskii] 0.0
pfu_aug2.0_31.1_03469.t1 gi|391341251|ref|XP_003744944.1| PREDICTED: myosin light chain kinase, smooth muscle-like [Metaseiulus occidentalis] 0.0
pfu_aug2.0_31.1_03469.t1 gi|158286904|ref|XP_308996.3| AGAP006746-PA [Anopheles gambiae str. PEST] 0.0

Transcript
Transcript IDpfu_aug2.0_31.1_03469.t1
Definition-
>pfu_aug2.0_31.1_03469.t1
atgggatcattgcatgcagaaaaagtctgtcagtataaactcagatgcatggtccttgaaaacaatatgttaaagaagca
cagtaacaaagtacacgtcgacgagagtgaaccgtcattaggtaaatttggcgaggttatgaaatgtaaagaaaggaaga
ctggtcgtctgctagctgctaaattcatagaagtgagtggaccgcaagagaaaagtgacgtcatcaatgaggtagaaatc
atgaagtgccttcaacatcccagactccttcaactatatgacgcctttgaaaagaaggacagattctgtatagtgacaga
attaatatctggaggagaactctttgaaagagtaataaacgatgattacatattgacagaaaaagcctgtatcatgttta
tgcgccagatctgtgaaggaatcgactacatgcactccaggaatattcttcaccttgatatgaagccagaaaatattctg
tgtttgacacgcgaaggaaatattatcaaaatcatagactttgggcttgctagaaaattttctcccggtggagatttacg
gatattattcggaactccagaatttatggcacctgaagttgtgaactttgaccctgcatcttttgcaacagatatgtgga
gtttaggagtcatttgttatgtattattgtccggcctgtcgccatttttgggtgaaaacgaggctgaaactcttgtgaat
gtgacgtctgctaaatgggactttaaagccgaggaatttgacagcatatcaaccgaagcgaaagatttcatttccaaact
cctcataaaggacccaaggaaaagaatgaattgtaaggaatgccttgaacaccaatggttacgcaggtcacagaaaaggg
aagccaaactggatagatcattatctacaaaacgattgaagaagtttgttttccgaagaaagtggcagaaagcagtaaat
gcaatgttagcattaaaaaggatgggtgtaaatcttacatag

Protein
Protein IDpfu_aug2.0_31.1_03469.t1
Definition-
>pfu_aug2.0_31.1_03469.t1
MGSLHAEKVCQYKLRCMVLENNMLKKHSNKVHVDESEPSLGKFGEVMKCKERKTGRLLAAKFIEVSGPQEKSDVINEVEI
MKCLQHPRLLQLYDAFEKKDRFCIVTELISGGELFERVINDDYILTEKACIMFMRQICEGIDYMHSRNILHLDMKPENIL
CLTREGNIIKIIDFGLARKFSPGGDLRILFGTPEFMAPEVVNFDPASFATDMWSLGVICYVLLSGLSPFLGENEAETLVN
VTSAKWDFKAEEFDSISTEAKDFISKLLIKDPRKRMNCKECLEHQWLRRSQKREAKLDRSLSTKRLKKFVFRRKWQKAVN
AMLALKRMGVNLT

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495