Gene
| Gene Model ID | pfu_aug2.0_31.1_03471 |
|---|---|
| Locus | scaffold31.1 : 532624 ... 553301 : + |
| To GenomeBrowser | scaffold31.1:532624..553301 |
| Genes list of scaffold | scaffold31.1 |
| Synonym | pfu_aug1.0_4158.1_30607 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_31.1_03471.t1 | 1 | 1 | C1q | 59 | 178 | 3.7e-20 | 72.2 | 3.1e-24 | 4.6e-20 | 71.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_31.1_03471.t1 | gi|597788353|ref|XP_007257597.1| | PREDICTED: collagen alpha-2(VIII) chain-like [Astyanax mexicanus] | 5.0e-11 |
Transcript
| Transcript ID | pfu_aug2.0_31.1_03471.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_31.1_03471.t1 atgaaacacgaaaaccttcatcgaagagcaactattatcctagtgttgataaatatagtgacaagcgataaaactgtcaa aaatttagatccagcaaaagaagtaaaacggttttgcaacaagttaggctgggacaagaaatgtaaaagtgtcagtttgt atcgaccagttgtagcattcaccgctcttgttacccatcctttcgctctcggtgagaaatcagcagttatatatgacaaa gtcttgaccaacatagggaatggatataacaatcttactggtcattttagagtaccagtaagcggactctactccatatc agcgtctatgatgggagatccgtcaaattggattcatttgaacctcgtgaggaatggtatagaacttgtgcgcttgtata ctcagaatggaagatggacactagcatcgcatactatcaatataccactgaagagaggtgatcacttgtgggtcaggagt caacccggatctggaaaaaagctttggggaaaagaaaattacaatgtcttttccgcaacccttttgagaaatggcaaatt tgattga |
|
Protein
| Protein ID | pfu_aug2.0_31.1_03471.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_31.1_03471.t1 MKHENLHRRATIILVLINIVTSDKTVKNLDPAKEVKRFCNKLGWDKKCKSVSLYRPVVAFTALVTHPFALGEKSAVIYDK VLTNIGNGYNNLTGHFRVPVSGLYSISASMMGDPSNWIHLNLVRNGIELVRLYTQNGRWTLASHTINIPLKRGDHLWVRS QPGSGKKLWGKENYNVFSATLLRNGKFD |
|