Gene
| Gene Model ID | pfu_aug2.0_31.1_03472 |
|---|---|
| Locus | scaffold31.1 : 553504 ... 582192 : + |
| To GenomeBrowser | scaffold31.1:553504..582192 |
| Genes list of scaffold | scaffold31.1 |
| Synonym | pfu_aug1.0_8375.1_31576 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_31.1_03472.t1 | 1 | 1 | Neur_chan_LBD | 63 | 248 | 1.4e-16 | 60.3 | 2.7e-20 | 2.0e-16 | 59.7 |
| pfu_aug2.0_31.1_03472.t1 | 2 | 1 | Neur_chan_memb | 284 | 370 | 6.7e-13 | 49.0 | 4.9e-16 | 3.6e-12 | 46.6 |
| pfu_aug2.0_31.1_03472.t1 | 2 | 2 | Neur_chan_memb | 435 | 460 | 6.7e-13 | 49.0 | 0.0009 | 6.6 | 6.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_31.1_03472.t1 | gi|585699431|ref|XP_006812589.1| | PREDICTED: glycine receptor subunit alpha-2-like [Saccoglossus kowalevskii] | 2.0e-36 |
| pfu_aug2.0_31.1_03472.t1 | gi|71981619|ref|NP_496306.2| | GGR-1 [Caenorhabditis elegans] | 4.0e-35 |
| pfu_aug2.0_31.1_03472.t1 | gi|260812497|ref|XP_002600957.1| | hypothetical protein BRAFLDRAFT_79146 [Branchiostoma floridae] | 1.0e-34 |
| pfu_aug2.0_31.1_03472.t1 | gi|308510148|ref|XP_003117257.1| | CRE-GGR-1 protein [Caenorhabditis remanei] | 2.0e-34 |
| pfu_aug2.0_31.1_03472.t1 | gi|585705601|ref|XP_006823667.1| | PREDICTED: glycine receptor subunit alpha-2-like [Saccoglossus kowalevskii] | 2.0e-34 |
Transcript
| Transcript ID | pfu_aug2.0_31.1_03472.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_31.1_03472.t1 atgttcaacgtttgcacacgtgatagatctgatagcggaacactattattactaattcttctacatcaaatggagaaaac aactttaacatcgattatccgtacgatgtttacacttttcataacgacaactcttatgacttctatttgctctgcgcatg cgcacgtgagactgatgcccgaggaccgaaggatcatcaatgaaatcctgtccagggacatgagcgtaccgccgttttac gacacaggaaacaggacgaagatcgaaattggtattgtgtttgccgatatgagagtttccgaaaaggctgatgtgcttct atcattctacctctatcaaacatggttcgaccccagacttgtcatgccttgtaagccgtgcacgtacaatacctctgccc cgcccatcgtgaaggcgcatacagtggaccaaaagtactggaaaaatctatggctgtctgaaacgtacattgaaaatgca gacacaatgcggtaccacgattctgtgatgccgaatcagtttgtttgggtgctcactaatggaacaatttggcatggtct cagactggacgtaaagacccattgtcagttcggtagaatggtgttcccagtagcaaaatatgcgtgtaatttaaagttta gagtgcattcctactcaataacagaattgtttttagactggtacaacaaaaatgaaataaattatgtggatggttttaat gaaggcgggacgaagatgactaaataccacaagaaagtgtgcgacaaagattcaacttcaattttgaacagtgcatgcct tgaactgataatagaagttgagagaaacttacatcagaatttcataagactatacatgcctagtgttttcatcattctaa ccggttggctaagcttctggatcaacaggaaggaatcttcagcacgagttaagttcggaacactttgcgttctcgccatg attacagaggatgctgggataactttcataatggcggacagcgtacggtccagcgctctggatgtttggtttgctgtctg tatggtgtttgcaacaattgttccgcttgaatacactattgtccacgtggttgataggtaccagtcagcaatgactttga tggaagaagggaaaaaaggcaaaaaatcgtgtaatcattgtacaactaaaccgacagtggacactcatctgctttataca tcgacgtcaatggttgcatggagtttaaaggatgttactagcagcgatctccatcagatgcactgtacaaaaccggacat aaaatatggatttattaagcgcattaacagtggggaaatagagaaattctttcgtgttatgtatccgatatcatttgcaa ttttcatgttgatatattggatattctacttgcattttgaagaagatttcggatatgaatga |
|
Protein
| Protein ID | pfu_aug2.0_31.1_03472.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_31.1_03472.t1 MFNVCTRDRSDSGTLLLLILLHQMEKTTLTSIIRTMFTLFITTTLMTSICSAHAHVRLMPEDRRIINEILSRDMSVPPFY DTGNRTKIEIGIVFADMRVSEKADVLLSFYLYQTWFDPRLVMPCKPCTYNTSAPPIVKAHTVDQKYWKNLWLSETYIENA DTMRYHDSVMPNQFVWVLTNGTIWHGLRLDVKTHCQFGRMVFPVAKYACNLKFRVHSYSITELFLDWYNKNEINYVDGFN EGGTKMTKYHKKVCDKDSTSILNSACLELIIEVERNLHQNFIRLYMPSVFIILTGWLSFWINRKESSARVKFGTLCVLAM ITEDAGITFIMADSVRSSALDVWFAVCMVFATIVPLEYTIVHVVDRYQSAMTLMEEGKKGKKSCNHCTTKPTVDTHLLYT STSMVAWSLKDVTSSDLHQMHCTKPDIKYGFIKRINSGEIEKFFRVMYPISFAIFMLIYWIFYLHFEEDFGYE |
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