Gene
| Gene Model ID | pfu_aug2.0_310.1_00587 |
|---|---|
| Locus | scaffold310.1 : 220174 ... 237059 : - |
| To GenomeBrowser | scaffold310.1:220174..237059 |
| Genes list of scaffold | scaffold310.1 |
| Synonym | pfu_aug1.0_30437.1_33757 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_310.1_00587.t1 | 2 | 1 | SNF2_N | 489 | 785 | 0.0 | 253.4 | 0.0 | 0.0 | 239.2 |
| pfu_aug2.0_310.1_00587.t1 | 2 | 1 | Helicase_C | 852 | 880 | 6.8e-15 | 54.6 | 0.036 | 180.0 | 2.0 |
| pfu_aug2.0_310.1_00587.t1 | 2 | 2 | SNF2_N | 872 | 926 | 0.0 | 253.4 | 1.4e-05 | 0.069 | 11.9 |
| pfu_aug2.0_310.1_00587.t1 | 2 | 2 | Helicase_C | 993 | 1068 | 6.8e-15 | 54.6 | 4.7e-17 | 2.3e-13 | 49.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_310.1_00587.t1 | gi|524882806|ref|XP_005098039.1| | PREDICTED: DNA excision repair protein ERCC-6-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_310.1_00587.t1 | gi|697491490|ref|XP_009676141.1| | PREDICTED: DNA excision repair protein ERCC-6 isoform X2 [Struthio camelus australis] | 0.0 |
| pfu_aug2.0_310.1_00587.t1 | gi|699682205|ref|XP_009887114.1| | PREDICTED: DNA excision repair protein ERCC-6 [Charadrius vociferus] | 0.0 |
| pfu_aug2.0_310.1_00587.t1 | gi|697491486|ref|XP_009676139.1| | PREDICTED: DNA excision repair protein ERCC-6 isoform X1 [Struthio camelus australis] | 0.0 |
| pfu_aug2.0_310.1_00587.t1 | gi|701333828|ref|XP_009979542.1| | PREDICTED: DNA excision repair protein ERCC-6-like [Tauraco erythrolophus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_310.1_00587.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_310.1_00587.t1 atggatgctaaacatctgttagaagatgaagttccctctggtatgaataatggaagcaatgtggatccgaaaagtgaaaa tgaaagtagttcggaagcacctgaagcgaagagtgaacagaattccagatttcatgtaaacagagagctcattcctgtgg cacagctgagtgaaaaccttgtatctgaagagctaaagggacttggattggatgtctttaaccaagatgagtttgaacaa ggtgttatggcacaagttgatgatgctatggcaaaagaggaagaagagagaaaaagaaagcagctggagaaggaagatat ggacatcaaatatgatattgcgaaagtaaagaaggagattgaaaccctaagcaaagtgatcaattctctagggaatgctg catcaacaagtagccatgtaaaagccagattaagttctgtagaaaagcagagagaaaataaattgagccagctgaagacc ctattagccagacaaaaggctgtacaaaaaaagttaaatgggtcagtagaggacaccaattctcaggaagatgattcagg tcaagagctagctgacttgaatcacttgctgggtctcggaggctccaaggaatcagaaaaggagagaatgataagactgg gtcagatgactccgtttggaactgttataaaaaccgagaccacagaaaatattgaaactgccactggtgctgaaaatact gaagataccgctgctcagggaccttcgtcagccaacctagaagaaagtagcaccgattcccaggactctacaaaggaacc agggagcagcaaacatcacaaatctcacaagtcaaagaagaaagatttagtttcgtcatccagttcaagggaggaatcaa ggaagaaagaaaacttttttgatgctcgagataaaaggcattataggaacgatgttgagggttcgtactatggagactca tacagaagtaggcagaaatacaaaataagccataatttcacggaggattctccgatgagcgacgaggaggcatgttacca agacgatcccgatggatatctgtccgacgagtatagaccaacggagaaagaactgcaggaagcgtcaagtgattctgggc tgagcgaagtggatgaaccaagtgataacctggaacctaaagagaaaaagtccaagaagagaaaattgtctttacgtccc aagaagccaccaaagttcgtcacgagtgatgatgaaggggatttgtcaggtcttcctctaaaacgtaaagtcagtaggga agcctccgtcagaaccaaggatgacggtgacgatgatctatacgagttgagaatgagtgattttaatgatgcagaaattc tgcgagataaacagatagctactggagaaatagtggaccctgaggataagacttttgatggtggacttacagtgccgggg agaatatggtccaaactatttgattaccagaaggttggagtcagctggttatgggagcttcactgccagcaagcaggggg aataatcggtgatgaaatgggactcggtaaaactattcagatgattgcattcatggcagctcttagacagagtaaacttc gggcaagagacttcagatacaaaggaataggaccctcgttgatcgtatgtcccaccaccgtgatgcagcaatgggtacga gagttccacaaatggtggccgatgttccgtgtcgctatactacactcctcagggtctgctacctgctcagaggatgagtt ggtgaggaagatagtgaagtgtaatggagtactggtgacgtcgtacaccactctggtgttacatcaagatgctgtactac cgtataactggcattatgttgtactggatgagggacacaaaatcaggaaccccgatgctcaggctaccctggtgtgtaaa cagtttaaaacaccgcacagaattatactatctggctctccaatacaaaacaatctgaaggagttatggtccttgttcga ctttatctttcctggaaaacttggaaccttgccagatttcttggcccatttctctgttcccatagtacaaggcggatatg caaatgcaacagaaattcaagtacagactgcctataaatgtgcatgtgtcctacgtgataccattaacccatatttactg agacgtatgaaggcagatgtcaagatcaatctaccaagcaaaaatgaacaggtgttattttgtcggctgacagacgaaca aagagaagtttacatggagtatttacagtctcgggaatgtcaggctattttacagggcaagttccagatatttgctggcc tgataactctgcgtaagatttgtaaccatgcggacatatgtacaggaggtcccaagctgtatataggggaggacacgcac ggggaccccaccctggagttcggatactggcgtagggcggggaagatgattgtcgtagaggccttactcaaactgtggaa gaagcaaggacacagggtccttttgttctctcaaagcagagctatgcttgacattctggaaaagtttgtactggatgaat cgtacacgtatctgaggatggacggtggtacccctatatccacacgacaacctctcatcaacacattcaacaaggtgcta ttttgtcggctcacagacgaacaaagggaagtttacatggagtatttacagtccagggaatgtcaggctattttacaggg caaattccagatatttgctggcctgattactttacgtaagatttgtaaccatgcggacatatgtacaggaggtcccaagc tgtatataggggaggacacgcacggagaccccaccctggagttcggatactggcggagggcggggaagatgattgttgta gaggccttactcaaactgtggaagaaacaaggacacagggtcctgttgttctctcaaagcagagctatgcttgacattct ggagaagtttgtactggacgagtcgtacacatatctgaggatggacggtggtacccctatatccacacgacaacctctta tcaacacattcaacaaggacccctcaatctttgtgttcttactgaccactcgcgtgggcgggcttggagtgaacttgacc ggtgctaacaaagtcatcatctacgacccagactggaatccaagtacagacacacaggcaagggagagaacttggagaat cggccagacaaaacaggtcactatctacaggcttctgacctcagggacaatagaggaaaaaatctatcacaggcaaattt tcaagcagtttctgaccaacagagttttgaaagatcccaagcaaagaagatttttcaaatcaaacgacctttatgaactg tttgaccttggtagtaaagacgacaaagaaggaacagagacaagtgccatatttgctggaactgggtcagaggtcaggaa gtcagaggtcaaaaagcgggtcaacagatttgacctgatgagagagaaacagaaagaagaagaaaaacctccaagtgacg aagaaggaagcaagtttttcgaggaggatgaaatcaaacgaatgagagaattggcaaggaaactcagtgagaaaattatg cacggaaaacaaggtaaaacagatgataaaggaccaacaagtgaaagtgaaagactgaagcatggagagactagtaaggt gaaatccaaaggagagagattcttggacagcaatactataaatatagaaagaaatgcaaggcttgatgtcagtgcggaaa gtaaggttaggacagagaataaggactcttgtcagaattgtgaaaaagaaaggaatcactccggagataaaggtcacaag tcatcaaagaagagtcattctgacagacatggaaaacactccaaggaaagaagagattcccattctgagaaagaaagaag gaagaagcacaagaagaggaagcataaagatgcagaatttgagggtgaaaaggtttctcatctggtaaaacaggacgaat acaagccacagaataacacagaggagaaagacgatcatactaaagaggatgattatgtacttcatcgattgttcaagaaa acagaatttgagggtgaaaaggtttctcatcttgtaaaacaagatgaatacaaaccacagaataacacagaggagaaaga cgatcatactaaagaggatgattatgtacttcatcgattgttcaagaaaacaggcatggaatgtgcaatgaagcatgatg tcatcatggatccaaacaagcatgactacatgatcatagaatctgaagcagagcgcattgccaaggatgcggccaaagcc ctcaaaaggtcaaggtcaaattgtcatgatgccaaatcagggataccaacatggacaggacagtctggggctaaaaggcc aagatttggaaacaaaaagaacagtcttctcgtagacaaaaccaaaaaggctgagcctattttagcacagagtactagtg cctccacctctacctcatcctccactccctccacctccaactcctcacagcagcactttgacggatccctggctggaaat gttgtgaaaaacttgcagacaggcgtaagagcggaaaatgtcatgtcctctgatcagctgattttacagatgaaaaaacg taatgaggttgtcgctaaacctccaggaaacgatgatgatgaagacgatgatgagaatgaagaagatacaagtgtacctg ttattgatagcgactcatttaaactcatttctgaaatcaagaacttcattctatttggttgtagtacaataggaaaagca tcgactcgtgaaattctcggntacaatagtactagtgcctccacctctacctcatcctccactccctccacctccaactc ctcacagcagcactttgacggatccctggctggaaatgttgtgaaaaacttgcagacgggcgtaagagcggaaaatgtca tgtcctctgatcagctgattttacagatgaaaaaacgtaatgaggttgtcgctaaacctccaggaaacgatgatgatgaa gacgatgatgagaatgaagaagatacaagtgtacctgttattgatagcgactcatttaaactcatttctgaaatcaagaa cttcattctatttggttgtagtacaataggaaaagcatcgactcgtgaaattctcggcgagttcggaccaaaacttccgc caactgactcaccgaaattcaaagccatgttgcacaaaatatgtgattttgagaaagtgaatggttcaggattttggaaa ttgaaatccgaattcaagtattaa |
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Protein
| Protein ID | pfu_aug2.0_310.1_00587.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_310.1_00587.t1 MDAKHLLEDEVPSGMNNGSNVDPKSENESSSEAPEAKSEQNSRFHVNRELIPVAQLSENLVSEELKGLGLDVFNQDEFEQ GVMAQVDDAMAKEEEERKRKQLEKEDMDIKYDIAKVKKEIETLSKVINSLGNAASTSSHVKARLSSVEKQRENKLSQLKT LLARQKAVQKKLNGSVEDTNSQEDDSGQELADLNHLLGLGGSKESEKERMIRLGQMTPFGTVIKTETTENIETATGAENT EDTAAQGPSSANLEESSTDSQDSTKEPGSSKHHKSHKSKKKDLVSSSSSREESRKKENFFDARDKRHYRNDVEGSYYGDS YRSRQKYKISHNFTEDSPMSDEEACYQDDPDGYLSDEYRPTEKELQEASSDSGLSEVDEPSDNLEPKEKKSKKRKLSLRP KKPPKFVTSDDEGDLSGLPLKRKVSREASVRTKDDGDDDLYELRMSDFNDAEILRDKQIATGEIVDPEDKTFDGGLTVPG RIWSKLFDYQKVGVSWLWELHCQQAGGIIGDEMGLGKTIQMIAFMAALRQSKLRARDFRYKGIGPSLIVCPTTVMQQWVR EFHKWWPMFRVAILHSSGSATCSEDELVRKIVKCNGVLVTSYTTLVLHQDAVLPYNWHYVVLDEGHKIRNPDAQATLVCK QFKTPHRIILSGSPIQNNLKELWSLFDFIFPGKLGTLPDFLAHFSVPIVQGGYANATEIQVQTAYKCACVLRDTINPYLL RRMKADVKINLPSKNEQVLFCRLTDEQREVYMEYLQSRECQAILQGKFQIFAGLITLRKICNHADICTGGPKLYIGEDTH GDPTLEFGYWRRAGKMIVVEALLKLWKKQGHRVLLFSQSRAMLDILEKFVLDESYTYLRMDGGTPISTRQPLINTFNKVL FCRLTDEQREVYMEYLQSRECQAILQGKFQIFAGLITLRKICNHADICTGGPKLYIGEDTHGDPTLEFGYWRRAGKMIVV EALLKLWKKQGHRVLLFSQSRAMLDILEKFVLDESYTYLRMDGGTPISTRQPLINTFNKDPSIFVFLLTTRVGGLGVNLT GANKVIIYDPDWNPSTDTQARERTWRIGQTKQVTIYRLLTSGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYEL FDLGSKDDKEGTETSAIFAGTGSEVRKSEVKKRVNRFDLMREKQKEEEKPPSDEEGSKFFEEDEIKRMRELARKLSEKIM HGKQGKTDDKGPTSESERLKHGETSKVKSKGERFLDSNTINIERNARLDVSAESKVRTENKDSCQNCEKERNHSGDKGHK SSKKSHSDRHGKHSKERRDSHSEKERRKKHKKRKHKDAEFEGEKVSHLVKQDEYKPQNNTEEKDDHTKEDDYVLHRLFKK TEFEGEKVSHLVKQDEYKPQNNTEEKDDHTKEDDYVLHRLFKKTGMECAMKHDVIMDPNKHDYMIIESEAERIAKDAAKA LKRSRSNCHDAKSGIPTWTGQSGAKRPRFGNKKNSLLVDKTKKAEPILAQSTSASTSTSSSTPSTSNSSQQHFDGSLAGN VVKNLQTGVRAENVMSSDQLILQMKKRNEVVAKPPGNDDDEDDDENEEDTSVPVIDSDSFKLISEIKNFILFGCSTIGKA STREILXYNSTSASTSTSSSTPSTSNSSQQHFDGSLAGNVVKNLQTGVRAENVMSSDQLILQMKKRNEVVAKPPGNDDDE DDDENEEDTSVPVIDSDSFKLISEIKNFILFGCSTIGKASTREILGEFGPKLPPTDSPKFKAMLHKICDFEKVNGSGFWK LKSEFKY |
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